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SEC61A2
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.1 nTPM
HPA:24.1 nTPM
GTEx:26.8 nTPM
FANTOM5:33.5 Scaled Tags Per Million
Pig:96.6 nTPM
Mouse:42.8 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.1
Sample id Sample description nTPM
Hippocampus
nTPM: 17.0
1898 Male, age 80, left hemisphere 18.7
1855 Male, age 76, left hemisphere 18.5
2148 Female, age 91, left hemisphere 17.2
2621 Female, age 67, right hemisphere 16.3
1911 Female, age 85, right hemisphere 15.8
2529 Female, age 94, left hemisphere 15.2
Dentate gyrus
nTPM: 19.9
2010 Male, age 76, both hemispheres 20.9
2528 Male, age 74, both hemispheres 20.6
1927 Female, age 91, both hemispheres 20.4
2246 Female, age 85, both hemispheres 19.7
2530 Female, age 94, left hemisphere 18.9
2531 Female, age 67, both hemispheres 18.9
Entorhinal gyrus
nTPM: 18.3
2764 Male, age 80, right hemisphere 22.1
2613 Female, age 94, left hemisphere 21.1
1787 Male, age 76, left hemisphere 19.0
1938 Female, age 85, left hemisphere 18.5
2117 Female, age 91, right hemisphere 15.6
2686 Male, age 75, right hemisphere 13.7
Hippocampus, CA1
nTPM: 21.9
2749 Male, age 80, left hemisphere 25.6
2045 Male, age 76, both hemispheres 25.3
1873 Female, age 85, both hemispheres 20.9
2527 Male, age 74, both hemispheres 19.8
2082 Female, age 91, right hemisphere 18.1
Hippocampus, CA2
nTPM: 18.9
1892 Male, age 76, both hemispheres 22.7
1940 Female, age 85, left hemisphere 20.9
1963 Male, age 80, left hemisphere 20.0
2113 Female, age 91, right hemisphere 18.0
2249 Male, age 74, both hemispheres 17.4
2437 Female, age 94, left hemisphere 14.6
Hippocampus, CA3
nTPM: 18.5
2137 Male, age 80, left hemisphere 21.0
1891 Female, age 85, both hemispheres 20.9
1867 Male, age 76, both hemispheres 20.2
2620 Female, age 94, left hemisphere 19.9
2436 Male, age 74, both hemispheres 16.9
2861 Female, age 67, both hemispheres 12.0
Parahippocampal cortex
nTPM: 19.9
2693 Female, age 94, both hemispheres 26.6
1850 Male, age 80, both hemispheres 22.8
2250 Female, age 67, right hemisphere 22.2
1933 Female, age 85, both hemispheres 21.9
1990 Female, age 91, right hemisphere 21.9
2245 Female, age 91, both hemispheres 18.5
2018 Male, age 76, both hemispheres 18.3
2532 Female, age 72, left hemisphere 16.8
2692 Male, age 74, both hemispheres 16.3
2622 Female, age 67, right hemisphere 13.3
Perirhinal gyrus
nTPM: 24.1
2521 Female, age 94, right hemisphere 32.2
1847 Female, age 91, left hemisphere 24.0
1794 Male, age 80, right hemisphere 23.8
1841 Female, age 85, right hemisphere 20.4
2848 Male, age 76, right hemisphere 20.2
Subiculum
nTPM: 18.5
2438 Female, age 94, left hemisphere 20.7
1901 Male, age 80, both hemispheres 20.4
1977 Female, age 85, both hemispheres 20.3
2619 Male, age 74, both hemispheres 18.4
2042 Male, age 76, both hemispheres 16.1
2729 Female, age 91, right hemisphere 15.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.8
Samples: 197

Max nTPM: 57.3
Min nTPM: 11.9
Std nTPM: 8.2
Median nTPM: 26.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 57.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 56.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 49.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 48.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 45.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 44.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 43.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 42.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 41.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 41.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 40.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.5
FF:10169-103B7 60 years, female 48.1
FF:10153-102I9 76 years, female 18.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 96.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 94.2
Samples: 4

Max nTPM: 112.0
Min nTPM: 76.0
Sample A Female 112.0
Sample B Female 97.3
Sample C Male 91.3
Sample D Male 76.0
Entorhinal cortex
nTPM: 84.8
Samples: 4

Max nTPM: 96.9
Min nTPM: 68.2
Sample A Female 96.9
Sample B Female 68.2
Sample C Male 92.6
Sample D Male 81.6
Subiculum
nTPM: 96.6
Samples: 4

Max nTPM: 113.6
Min nTPM: 86.2
Sample A Female 113.6
Sample B Female 87.5
Sample C Male 98.9
Sample D Male 86.2
Ventral hippocampus
nTPM: 91.7
Samples: 4

Max nTPM: 111.8
Min nTPM: 64.5
Sample A Female 89.9
Sample B Female 64.5
Sample C Male 111.8
Sample D Male 100.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 42.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 42.7
Samples: 4

Max nTPM: 45.6
Min nTPM: 36.0
Sample A Male 36.0
Sample B Male 44.9
Sample C Female 44.1
Sample D Female 45.6
Hippocampal formation
nTPM: 42.8
Samples: 4

Max nTPM: 46.9
Min nTPM: 39.4
Sample A Male 46.9
Sample B Male 44.2
Sample C Female 39.4
Sample D Female 40.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
74990483 Antisense, RP_060410_01_A06, Mouse strain C57BL/6J (56 days, male) 1.7
112643861 Antisense, RP_110421_01_B05, Mouse strain C57BL/6J (56 days, male) 1.5

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