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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.1 nTPM
HPA:24.1 nTPM
GTEx:23.9 nTPM
FANTOM5:29.7 Scaled Tags Per Million
Pig:125.2 nTPM
Mouse:39.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.6
2411 Female, age 72, unknown 23.0
1833 Male, age 53, unknown 18.7
1870 Female, age 42, unknown 18.3
1827 Male, age 72, unknown 16.6
1830 Male, age 51, unknown 16.5
2219 Male, age 76, both hemispheres 15.6
2019 Male, age 18, unknown 14.8
2828 Female, age 72, unknown 13.7
2666 Male, age 74, left hemisphere 11.1
2586 Male, age 75, left hemisphere 7.8
Dorsal raphe nucleus
nTPM: 17.5
2750 Male, age 76, both hemispheres 21.1
2047 Male, age 72, unknown 19.6
2298 Female, age 72, unknown 17.2
1828 Male, age 53, unknown 16.5
2016 Female, age 72, unknown 13.3
Inferior colliculus
nTPM: 15.5
2097 Female, age 72, unknown 17.1
1848 Female, age 42, unknown 16.2
2849 Male, age 72, unknown 15.1
1890 Male, age 53, unknown 13.8
Median raphe nucleus
nTPM: 24.1
2220 Male, age 76, midline 24.1
Pedunculopontine tegmental nucleus
nTPM: 20.0
2334 Male, age 80, both hemispheres 22.1
1921 Female, age 85, both hemispheres 21.4
2338 Male, age 61, both hemispheres 16.4
Periaquaductal grey, anterior
nTPM: 15.0
1947 Male, age 18, unknown 19.1
1795 Male, age 51, unknown 15.8
2502 Female, age 75, unknown 10.2
Periaquaductal grey, dorsal
nTPM: 15.1
2464 Female, age 72, unknown 16.0
2850 Male, age 76, both hemispheres 15.7
1840 Male, age 53, unknown 15.5
1831 Male, age 72, unknown 13.2
Periaquaductal grey, lateral
nTPM: 15.0
2272 Male, age 74, both hemispheres 15.5
2140 Male, age 76, both hemispheres 15.2
2053 Male, age 18, unknown 14.3
Pretectal area
nTPM: 16.6
2224 Female, age 72, unknown 19.9
2667 Female, age 75, unknown 19.5
2825 Male, age 18, unknown 18.7
2316 Male, age 76, right hemisphere 17.9
2273 Male, age 74, both hemispheres 17.1
1815 Male, age 53, unknown 15.9
1817 Female, age 42, unknown 15.3
1944 Female, age 72, unknown 15.2
1816 Male, age 51, unknown 14.8
2007 Male, age 72, unknown 14.3
2407 Male, age 75, both hemispheres 13.8
Red nucleus
nTPM: 14.4
2823 Male, age 76, right hemisphere 18.1
1821 Female, age 72, unknown 16.0
1865 Male, age 51, unknown 14.9
1954 Female, age 42, unknown 14.8
2725 Female, age 75, unknown 14.6
2503 Female, age 72, unknown 14.2
2588 Male, age 74, left hemisphere 14.0
2769 Male, age 72, unknown 13.7
1904 Male, age 53, unknown 13.4
2227 Male, age 72, unknown 13.3
2584 Male, age 75, left hemisphere 12.9
2785 Male, age 18, unknown 12.7
Substantia nigra
nTPM: 16.4
2241 Male, age 72, unknown 23.1
2590 Female, age 75, unknown 19.4
1889 Female, age 72, unknown 17.8
2583 Male, age 75, right hemisphere 17.2
2409 Female, age 72, unknown 16.5
1941 Male, age 53, unknown 16.2
1916 Female, age 42, unknown 15.9
1851 Male, age 51, unknown 15.0
2699 Male, age 18, unknown 12.3
2665 Male, age 74, both hemispheres 10.4
Superior colliculus
nTPM: 14.4
1895 Male, age 76, right hemisphere 19.1
2587 Male, age 74, left hemisphere 17.0
1796 Male, age 53, unknown 15.7
1913 Female, age 42, unknown 15.1
1839 Male, age 51, unknown 15.0
2261 Male, age 18, unknown 14.9
2087 Female, age 72, unknown 14.0
2668 Female, age 75, unknown 13.7
1995 Male, age 72, unknown 11.7
2664 Male, age 75, both hemispheres 8.0
Ventral tegmental area
nTPM: 16.3
2218 Male, age 76, both hemispheres 18.1
2223 Female, age 72, unknown 17.7
2410 Female, age 72, unknown 16.4
1942 Male, age 51, unknown 15.3
1915 Female, age 42, unknown 15.2
2021 Male, age 53, unknown 15.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.9
Samples: 139

Max nTPM: 42.1
Min nTPM: 8.5
Std nTPM: 7.9
Median nTPM: 23.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 41.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 39.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 39.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 39.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 38.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 38.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 37.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 36.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 35.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.7
FF:10158-103A5 76 years, female 29.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 125.2
Pig sample Sample description nTPM
Midbrain
nTPM: 88.3
Samples: 4

Max nTPM: 104.3
Min nTPM: 76.2
Sample A Female 76.2
Sample B Female 89.3
Sample C Male 104.3
Sample D Male 83.2
Periaqueductal gray
nTPM: 89.4
Samples: 3

Max nTPM: 120.8
Min nTPM: 70.8
Sample B Female 70.8
Sample C Male 120.8
Sample D Male 76.6
Substantia nigra
nTPM: 125.3
Samples: 4

Max nTPM: 189.7
Min nTPM: 67.8
Sample A Female 160.8
Sample B Female 82.7
Sample C Male 189.7
Sample D Male 67.8
Superior colliculi
nTPM: 76.2
Samples: 4

Max nTPM: 94.4
Min nTPM: 36.8
Sample A Female 94.4
Sample B Female 36.8
Sample C Male 93.5
Sample D Male 80.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.1
Samples: 4

Max nTPM: 40.9
Min nTPM: 37.5
Sample A Male 37.9
Sample B Male 40.9
Sample C Female 40.0
Sample D Female 37.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
74990483 Antisense, RP_060410_01_A06, Mouse strain C57BL/6J (56 days, male) 0.8
112643861 Antisense, RP_110421_01_B05, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.