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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.2 nTPM
HPA:23.2 nTPM
GTEx:21.4 nTPM
FANTOM5:47.4 Scaled Tags Per Million
Pig:100.1 nTPM
Mouse:36.4 nTPM
Allen mouse:1.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 23.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.2
2288 Male, age 75, left hemisphere 19.1
2846 Female, age 79, unknown 14.2
1854 Male, age 80, left hemisphere 12.6
2289 Male, age 61, right hemisphere 12.6
1781 Male, age 74, unknown 12.4
2290 Female, age 72, unknown 11.8
2481 Female, age 94, left hemisphere 11.5
1857 Female, age 85, left hemisphere 11.4
Claustrum
nTPM: 21.2
2568 Male, age 61, both hemispheres 26.1
1956 Male, age 74, unknown 22.7
2198 Male, age 80, both hemispheres 22.1
2392 Female, age 94, both hemispheres 21.0
2491 Male, age 75, both hemispheres 20.8
2284 Female, age 91, both hemispheres 20.4
2292 Female, age 85, both hemispheres 19.6
2645 Female, age 72, unknown 19.5
2196 Female, age 79, unknown 18.7
Globus pallidus, externus
nTPM: 15.2
2395 Male, age 75, both hemispheres 21.7
2772 Female, age 79, unknown 16.0
1996 Male, age 80, right hemisphere 13.6
2646 Male, age 61, right hemisphere 13.1
2567 Female, age 72, unknown 11.8
Globus pallidus, internus
nTPM: 17.7
2287 Male, age 75, right hemisphere 23.7
2111 Female, age 85, right hemisphere 23.2
2778 Female, age 91, both hemispheres 20.4
1818 Male, age 74, unknown 17.5
2566 Female, age 72, unknown 15.0
2037 Male, age 80, right hemisphere 14.8
2483 Female, age 94, right hemisphere 9.4
Nucleus accumbens
nTPM: 16.0
2286 Male, age 75, left hemisphere 19.6
1856 Female, age 91, right hemisphere 18.2
2698 Female, age 72, unknown 17.2
2824 Male, age 61, right hemisphere 16.7
2732 Male, age 80, right hemisphere 15.5
1806 Female, age 85, left hemisphere 14.4
1783 Male, age 74, unknown 13.8
2391 Female, age 94, left hemisphere 12.9
Nucleus basalis of Meynert
nTPM: 12.5
2821 Male, age 75, both hemispheres 17.4
2393 Male, age 80, right hemisphere 15.3
2484 Female, age 94, left hemisphere 9.6
2569 Male, age 61, both hemispheres 7.4
Nucleus of the diagonal band
nTPM: 21.7
2029 Male, age 61, right hemisphere 25.4
2195 Female, age 85, both hemispheres 22.6
2775 Male, age 80, right hemisphere 22.4
1812 Female, age 91, both hemispheres 21.8
1979 Male, age 74, unknown 16.3
Olfactory tubercle
nTPM: 23.2
1998 Female, age 91, both hemispheres 25.3
2487 Female, age 94, left hemisphere 24.4
1846 Male, age 80, right hemisphere 22.6
2856 Male, age 75, right hemisphere 20.6
Putamen
nTPM: 13.4
1838 Male, age 80, right hemisphere 17.4
1937 Female, age 91, right hemisphere 15.2
2466 Female, age 79, unknown 13.7
2647 Male, age 75, left hemisphere 13.4
1829 Male, age 74, unknown 13.2
2482 Female, age 94, left hemisphere 11.5
2489 Female, age 72, unknown 9.4
Septal nuclei
nTPM: 20.3
2629 Female, age 94, right hemisphere 26.6
2031 Female, age 72, unknown 22.8
1960 Male, age 74, unknown 22.4
2009 Female, age 91, both hemispheres 21.5
2059 Female, age 85, both hemispheres 18.0
2394 Male, age 61, left hemisphere 15.8
2199 Male, age 80, right hemisphere 14.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.8
Samples: 246

Max nTPM: 37.0
Min nTPM: 8.7
Std nTPM: 4.3
Median nTPM: 19.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 37.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 30.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 28.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 28.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 27.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 27.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 27.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 27.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 26.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 26.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 26.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.4
Samples: 246

Max nTPM: 53.1
Min nTPM: 8.3
Std nTPM: 5.7
Median nTPM: 21.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 53.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 43.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 39.2
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 34.2
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 33.9
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 33.1
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 31.7
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 31.4
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 30.3
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 30.1
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 29.9
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Brain - Putamen (basal ganglia)
Average nTPM: 18.6
Samples: 205

Max nTPM: 28.6
Min nTPM: 8.0
Std nTPM: 4.2
Median nTPM: 18.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 28.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 28.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 27.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 27.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 27.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 26.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 26.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 26.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 26.4
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 26.3
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 26.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.3
FF:10164-103B2 76 years, female 20.3
Globus pallidus
Scaled Tags Per Million: 21.3
FF:10175-103C4 60 years, female 24.4
FF:10161-103A8 76 years, female 18.2
Nucleus accumbens
Scaled Tags Per Million: 47.4
FF:10037-101F1 23-56 years, mixed 47.4
Putamen
Scaled Tags Per Million: 31.4
FF:10176-103C5 60 years, female 31.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 100.1
Pig sample Sample description nTPM
Caudate
nTPM: 85.8
Samples: 4

Max nTPM: 106.2
Min nTPM: 74.3
Sample A Female 77.6
Sample B Female 84.9
Sample C Male 106.2
Sample D Male 74.3
Putamen
nTPM: 86.8
Samples: 4

Max nTPM: 109.1
Min nTPM: 71.6
Sample A Female 73.4
Sample B Female 71.6
Sample C Male 109.1
Sample D Male 92.9
Septum
nTPM: 100.1
Samples: 4

Max nTPM: 134.0
Min nTPM: 74.9
Sample A Female 93.4
Sample B Female 74.9
Sample C Male 134.0
Sample D Male 98.0
Ventral pallidum
nTPM: 87.9
Samples: 4

Max nTPM: 122.9
Min nTPM: 64.0
Sample A Female 85.8
Sample B Female 64.0
Sample C Male 122.9
Sample D Male 79.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 36.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 25.7
Samples: 4

Max nTPM: 30.2
Min nTPM: 22.8
Sample A Male 22.8
Sample B Male 22.8
Sample C Female 30.2
Sample D Female 27.1
Septum
nTPM: 36.4
Samples: 4

Max nTPM: 37.6
Min nTPM: 34.8
Sample A Male 36.2
Sample B Male 36.9
Sample C Female 37.6
Sample D Female 34.8
Ventral forebrain
nTPM: 33.3
Samples: 4

Max nTPM: 34.5
Min nTPM: 30.8
Sample A Male 30.8
Sample B Male 33.7
Sample C Female 34.5
Sample D Female 34.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
74990483 Antisense, RP_060410_01_A06, Mouse strain C57BL/6J (56 days, male) 1.0
112643861 Antisense, RP_110421_01_B05, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 1.0
74990483 Antisense, RP_060410_01_A06, Mouse strain C57BL/6J (56 days, male) 1.2
112643861 Antisense, RP_110421_01_B05, Mouse strain C57BL/6J (56 days, male) 0.8

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.