ABOUTMENU
HELP
NEWS
MSANTD3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.6 nTPM
HPA:8.6 nTPM
GTEx:12.3 nTPM
FANTOM5:28.9 Scaled Tags Per Million
Mouse:12.2 nTPM
Allen mouse:0.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 8.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.9
2288 Male, age 75, left hemisphere 7.5
2481 Female, age 94, left hemisphere 7.0
1781 Male, age 74, unknown 6.8
2846 Female, age 79, unknown 6.1
1857 Female, age 85, left hemisphere 5.7
2290 Female, age 72, unknown 5.6
1854 Male, age 80, left hemisphere 5.5
2289 Male, age 61, right hemisphere 2.5
Claustrum
nTPM: 8.3
2196 Female, age 79, unknown 11.3
1956 Male, age 74, unknown 10.0
2645 Female, age 72, unknown 9.3
2284 Female, age 91, both hemispheres 8.5
2491 Male, age 75, both hemispheres 7.8
2198 Male, age 80, both hemispheres 7.4
2292 Female, age 85, both hemispheres 7.0
2392 Female, age 94, both hemispheres 7.0
2568 Male, age 61, both hemispheres 6.7
Globus pallidus, externus
nTPM: 5.9
2772 Female, age 79, unknown 7.2
2395 Male, age 75, both hemispheres 6.6
2567 Female, age 72, unknown 5.6
1996 Male, age 80, right hemisphere 5.5
2646 Male, age 61, right hemisphere 4.7
Globus pallidus, internus
nTPM: 6.8
2287 Male, age 75, right hemisphere 9.2
1818 Male, age 74, unknown 7.5
2566 Female, age 72, unknown 7.3
2111 Female, age 85, right hemisphere 6.9
2483 Female, age 94, right hemisphere 6.2
2037 Male, age 80, right hemisphere 5.7
2778 Female, age 91, both hemispheres 5.3
Nucleus accumbens
nTPM: 5.5
2698 Female, age 72, unknown 7.8
1856 Female, age 91, right hemisphere 7.6
2286 Male, age 75, left hemisphere 6.5
2391 Female, age 94, left hemisphere 5.8
1783 Male, age 74, unknown 5.3
1806 Female, age 85, left hemisphere 4.2
2732 Male, age 80, right hemisphere 3.8
2824 Male, age 61, right hemisphere 3.0
Nucleus basalis of Meynert
nTPM: 5.1
2821 Male, age 75, both hemispheres 5.6
2484 Female, age 94, left hemisphere 5.1
2393 Male, age 80, right hemisphere 4.9
2569 Male, age 61, both hemispheres 4.6
Nucleus of the diagonal band
nTPM: 8.6
2195 Female, age 85, both hemispheres 11.3
2775 Male, age 80, right hemisphere 9.9
1979 Male, age 74, unknown 8.4
1812 Female, age 91, both hemispheres 7.5
2029 Male, age 61, right hemisphere 5.9
Olfactory tubercle
nTPM: 8.5
1846 Male, age 80, right hemisphere 9.4
1998 Female, age 91, both hemispheres 8.7
2487 Female, age 94, left hemisphere 8.1
2856 Male, age 75, right hemisphere 8.0
Putamen
nTPM: 6.4
2647 Male, age 75, left hemisphere 8.0
2489 Female, age 72, unknown 7.5
2482 Female, age 94, left hemisphere 7.0
1838 Male, age 80, right hemisphere 6.9
1937 Female, age 91, right hemisphere 5.8
1829 Male, age 74, unknown 5.1
2466 Female, age 79, unknown 4.4
Septal nuclei
nTPM: 7.7
1960 Male, age 74, unknown 10.7
2629 Female, age 94, right hemisphere 8.6
2031 Female, age 72, unknown 8.3
2009 Female, age 91, both hemispheres 6.9
2199 Male, age 80, right hemisphere 6.9
2059 Female, age 85, both hemispheres 6.7
2394 Male, age 61, left hemisphere 5.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.5
Samples: 246

Max nTPM: 18.3
Min nTPM: 6.2
Std nTPM: 2.0
Median nTPM: 10.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 18.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 18.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 17.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 17.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 15.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 15.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 15.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 15.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 15.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 15.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 14.8
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.8
Samples: 246

Max nTPM: 28.6
Min nTPM: 6.6
Std nTPM: 2.4
Median nTPM: 10.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 28.6
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 18.8
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 18.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 18.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 18.1
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 17.4
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 17.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 17.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 16.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 15.8
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 15.5
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 12.3
Samples: 205

Max nTPM: 26.6
Min nTPM: 6.6
Std nTPM: 3.0
Median nTPM: 11.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 26.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 23.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 22.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 22.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 22.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 21.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 21.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 19.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 19.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 18.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 18.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.2
FF:10164-103B2 76 years, female 22.2
Globus pallidus
Scaled Tags Per Million: 23.4
FF:10161-103A8 76 years, female 27.1
FF:10175-103C4 60 years, female 19.7
Nucleus accumbens
Scaled Tags Per Million: 28.9
FF:10037-101F1 23-56 years, mixed 28.9
Putamen
Scaled Tags Per Million: 24.6
FF:10176-103C5 60 years, female 24.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 11.2
Samples: 4

Max nTPM: 12.8
Min nTPM: 8.9
Sample A Male 11.6
Sample B Male 12.8
Sample C Female 11.6
Sample D Female 8.9
Septum
nTPM: 10.0
Samples: 4

Max nTPM: 11.0
Min nTPM: 8.3
Sample A Male 10.3
Sample B Male 11.0
Sample C Female 8.3
Sample D Female 10.2
Ventral forebrain
nTPM: 12.2
Samples: 4

Max nTPM: 13.6
Min nTPM: 11.1
Sample A Male 12.3
Sample B Male 11.1
Sample C Female 11.6
Sample D Female 13.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
70946197 Antisense, RP_050414_04_C07, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.7
70946197 Antisense, RP_050414_04_C07, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.