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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.7 nTPM
HPA:31.7 nTPM
GTEx:29.6 nTPM
FANTOM5:18.4 Scaled Tags Per Million
Pig:46.5 nTPM
Mouse:98.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.7
2019 Male, age 18, unknown 31.7
2411 Female, age 72, unknown 31.4
2219 Male, age 76, both hemispheres 31.0
1870 Female, age 42, unknown 30.6
1827 Male, age 72, unknown 29.9
1833 Male, age 53, unknown 29.4
1830 Male, age 51, unknown 28.9
2586 Male, age 75, left hemisphere 28.6
2666 Male, age 74, left hemisphere 27.8
2828 Female, age 72, unknown 27.5
Dorsal raphe nucleus
nTPM: 30.3
1828 Male, age 53, unknown 32.8
2047 Male, age 72, unknown 31.0
2298 Female, age 72, unknown 30.4
2750 Male, age 76, both hemispheres 29.7
2016 Female, age 72, unknown 27.8
Inferior colliculus
nTPM: 30.6
2097 Female, age 72, unknown 32.3
1848 Female, age 42, unknown 31.0
1890 Male, age 53, unknown 29.9
2849 Male, age 72, unknown 29.3
Median raphe nucleus
nTPM: 31.7
2220 Male, age 76, midline 31.7
Pedunculopontine tegmental nucleus
nTPM: 31.5
2334 Male, age 80, both hemispheres 32.4
1921 Female, age 85, both hemispheres 31.9
2338 Male, age 61, both hemispheres 30.2
Periaquaductal grey, anterior
nTPM: 29.9
1947 Male, age 18, unknown 31.3
1795 Male, age 51, unknown 29.6
2502 Female, age 75, unknown 29.0
Periaquaductal grey, dorsal
nTPM: 28.9
1840 Male, age 53, unknown 29.7
1831 Male, age 72, unknown 28.8
2850 Male, age 76, both hemispheres 28.6
2464 Female, age 72, unknown 28.5
Periaquaductal grey, lateral
nTPM: 27.8
2140 Male, age 76, both hemispheres 27.9
2053 Male, age 18, unknown 27.8
2272 Male, age 74, both hemispheres 27.7
Pretectal area
nTPM: 30.8
1817 Female, age 42, unknown 33.7
1944 Female, age 72, unknown 32.9
2007 Male, age 72, unknown 32.9
1816 Male, age 51, unknown 32.8
2667 Female, age 75, unknown 31.8
2224 Female, age 72, unknown 31.0
1815 Male, age 53, unknown 30.3
2273 Male, age 74, both hemispheres 29.2
2825 Male, age 18, unknown 28.6
2316 Male, age 76, right hemisphere 28.3
2407 Male, age 75, both hemispheres 27.5
Red nucleus
nTPM: 30.5
1821 Female, age 72, unknown 38.0
1954 Female, age 42, unknown 32.2
2503 Female, age 72, unknown 30.5
2725 Female, age 75, unknown 30.4
1865 Male, age 51, unknown 30.0
2785 Male, age 18, unknown 30.0
2227 Male, age 72, unknown 29.9
2823 Male, age 76, right hemisphere 29.9
1904 Male, age 53, unknown 29.6
2769 Male, age 72, unknown 29.6
2588 Male, age 74, left hemisphere 28.0
2584 Male, age 75, left hemisphere 27.5
Substantia nigra
nTPM: 31.7
1916 Female, age 42, unknown 34.2
1941 Male, age 53, unknown 33.7
2241 Male, age 72, unknown 33.7
1889 Female, age 72, unknown 32.8
2665 Male, age 74, both hemispheres 32.1
1851 Male, age 51, unknown 31.9
2699 Male, age 18, unknown 30.2
2590 Female, age 75, unknown 29.9
2409 Female, age 72, unknown 29.7
2583 Male, age 75, right hemisphere 28.7
Superior colliculus
nTPM: 29.6
1895 Male, age 76, right hemisphere 33.3
2668 Female, age 75, unknown 30.9
2087 Female, age 72, unknown 30.6
2587 Male, age 74, left hemisphere 30.6
1839 Male, age 51, unknown 29.8
2261 Male, age 18, unknown 29.6
1796 Male, age 53, unknown 29.1
1913 Female, age 42, unknown 28.2
1995 Male, age 72, unknown 27.4
2664 Male, age 75, both hemispheres 27.1
Ventral tegmental area
nTPM: 29.8
1915 Female, age 42, unknown 31.5
2218 Male, age 76, both hemispheres 31.4
2410 Female, age 72, unknown 31.2
2223 Female, age 72, unknown 28.8
1942 Male, age 51, unknown 28.6
2021 Male, age 53, unknown 27.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.6
Samples: 139

Max nTPM: 74.1
Min nTPM: 10.5
Std nTPM: 10.2
Median nTPM: 27.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 74.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 63.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 57.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 53.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 52.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 47.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 45.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 43.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 43.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 43.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.4
FF:10158-103A5 76 years, female 18.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.5
Pig sample Sample description nTPM
Midbrain
nTPM: 45.7
Samples: 4

Max nTPM: 56.6
Min nTPM: 33.2
Sample A Female 56.6
Sample B Female 55.1
Sample C Male 37.8
Sample D Male 33.2
Periaqueductal gray
nTPM: 36.8
Samples: 3

Max nTPM: 43.0
Min nTPM: 32.4
Sample B Female 43.0
Sample C Male 32.4
Sample D Male 35.1
Substantia nigra
nTPM: 43.9
Samples: 4

Max nTPM: 58.8
Min nTPM: 33.3
Sample A Female 58.8
Sample B Female 41.4
Sample C Male 33.3
Sample D Male 41.9
Superior colliculi
nTPM: 46.5
Samples: 4

Max nTPM: 57.0
Min nTPM: 36.7
Sample A Female 57.0
Sample B Female 36.7
Sample C Male 48.7
Sample D Male 43.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 98.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 98.6
Samples: 4

Max nTPM: 101.7
Min nTPM: 96.3
Sample A Male 97.5
Sample B Male 101.7
Sample C Female 98.7
Sample D Female 96.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
512531 Antisense, RP_040809_02_B03, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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