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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:52.3 nTPM
HPA:52.3 nTPM
GTEx:41.9 nTPM
FANTOM5:69.7 Scaled Tags Per Million
Pig:10.7 nTPM
Mouse:103.8 nTPM
Allen mouse:3.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA029318Antibody HPA064737
Glial cells Not detectedMedium
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.7
2481 Female, age 94, left hemisphere 64.7
2289 Male, age 61, right hemisphere 53.1
1781 Male, age 74, unknown 44.0
1854 Male, age 80, left hemisphere 38.6
2846 Female, age 79, unknown 38.6
2288 Male, age 75, left hemisphere 38.2
2290 Female, age 72, unknown 36.8
1857 Female, age 85, left hemisphere 35.6
Claustrum
nTPM: 51.7
2284 Female, age 91, both hemispheres 58.4
2198 Male, age 80, both hemispheres 58.0
2568 Male, age 61, both hemispheres 54.6
2645 Female, age 72, unknown 54.5
2491 Male, age 75, both hemispheres 52.4
1956 Male, age 74, unknown 50.9
2292 Female, age 85, both hemispheres 46.9
2196 Female, age 79, unknown 45.2
2392 Female, age 94, both hemispheres 44.2
Globus pallidus, externus
nTPM: 34.7
2772 Female, age 79, unknown 41.8
2646 Male, age 61, right hemisphere 34.5
2395 Male, age 75, both hemispheres 34.3
1996 Male, age 80, right hemisphere 32.0
2567 Female, age 72, unknown 31.0
Globus pallidus, internus
nTPM: 35.9
2483 Female, age 94, right hemisphere 42.8
2287 Male, age 75, right hemisphere 41.1
1818 Male, age 74, unknown 38.1
2778 Female, age 91, both hemispheres 35.7
2037 Male, age 80, right hemisphere 33.3
2566 Female, age 72, unknown 31.3
2111 Female, age 85, right hemisphere 29.0
Nucleus accumbens
nTPM: 39.5
2391 Female, age 94, left hemisphere 48.9
1856 Female, age 91, right hemisphere 42.4
2286 Male, age 75, left hemisphere 39.6
2698 Female, age 72, unknown 38.7
1806 Female, age 85, left hemisphere 38.1
1783 Male, age 74, unknown 37.5
2824 Male, age 61, right hemisphere 35.5
2732 Male, age 80, right hemisphere 35.4
Nucleus basalis of Meynert
nTPM: 36.7
2484 Female, age 94, left hemisphere 39.2
2821 Male, age 75, both hemispheres 38.4
2393 Male, age 80, right hemisphere 37.6
2569 Male, age 61, both hemispheres 31.4
Nucleus of the diagonal band
nTPM: 50.4
2775 Male, age 80, right hemisphere 56.6
2195 Female, age 85, both hemispheres 56.2
1812 Female, age 91, both hemispheres 56.0
2029 Male, age 61, right hemisphere 43.0
1979 Male, age 74, unknown 40.0
Olfactory tubercle
nTPM: 52.1
1998 Female, age 91, both hemispheres 59.8
2856 Male, age 75, right hemisphere 50.3
1846 Male, age 80, right hemisphere 49.2
2487 Female, age 94, left hemisphere 49.2
Putamen
nTPM: 38.2
2482 Female, age 94, left hemisphere 44.6
2466 Female, age 79, unknown 40.6
1937 Female, age 91, right hemisphere 40.3
1838 Male, age 80, right hemisphere 39.6
1829 Male, age 74, unknown 36.5
2647 Male, age 75, left hemisphere 35.7
2489 Female, age 72, unknown 30.5
Septal nuclei
nTPM: 52.3
1960 Male, age 74, unknown 67.8
2031 Female, age 72, unknown 63.5
2009 Female, age 91, both hemispheres 56.2
2629 Female, age 94, right hemisphere 55.0
2059 Female, age 85, both hemispheres 47.5
2394 Male, age 61, left hemisphere 40.6
2199 Male, age 80, right hemisphere 35.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 41.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.9
Samples: 246

Max nTPM: 89.2
Min nTPM: 13.0
Std nTPM: 9.8
Median nTPM: 34.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 89.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 64.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 59.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 58.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 57.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 51.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 51.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 50.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 49.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 48.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 48.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.9
Samples: 246

Max nTPM: 112.9
Min nTPM: 16.8
Std nTPM: 12.1
Median nTPM: 40.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 112.9
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 76.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 71.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 71.0
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 68.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 66.5
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 65.3
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 65.2
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 64.3
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 61.6
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 61.5
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Brain - Putamen (basal ganglia)
Average nTPM: 33.1
Samples: 205

Max nTPM: 67.0
Min nTPM: 11.2
Std nTPM: 9.8
Median nTPM: 34.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 67.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 60.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 56.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 55.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 53.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 51.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 51.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 49.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 49.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 48.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 48.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.7
FF:10164-103B2 76 years, female 27.7
Globus pallidus
Scaled Tags Per Million: 29.1
FF:10161-103A8 76 years, female 29.8
FF:10175-103C4 60 years, female 28.4
Nucleus accumbens
Scaled Tags Per Million: 69.7
FF:10037-101F1 23-56 years, mixed 69.7
Putamen
Scaled Tags Per Million: 36.9
FF:10176-103C5 60 years, female 36.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.7
Pig sample Sample description nTPM
Caudate
nTPM: 10.7
Samples: 4

Max nTPM: 12.2
Min nTPM: 9.1
Sample A Female 10.4
Sample B Female 11.1
Sample C Male 12.2
Sample D Male 9.1
Putamen
nTPM: 9.7
Samples: 4

Max nTPM: 13.0
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 9.2
Sample C Male 13.0
Sample D Male 9.3
Septum
nTPM: 10.6
Samples: 4

Max nTPM: 15.3
Min nTPM: 6.7
Sample A Female 10.9
Sample B Female 9.4
Sample C Male 15.3
Sample D Male 6.7
Ventral pallidum
nTPM: 10.2
Samples: 4

Max nTPM: 12.1
Min nTPM: 8.7
Sample A Female 9.5
Sample B Female 10.3
Sample C Male 12.1
Sample D Male 8.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 103.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 94.2
Samples: 4

Max nTPM: 100.5
Min nTPM: 90.2
Sample A Male 100.5
Sample B Male 91.8
Sample C Female 90.2
Sample D Female 94.1
Septum
nTPM: 96.8
Samples: 4

Max nTPM: 102.0
Min nTPM: 87.5
Sample A Male 102.0
Sample B Male 96.4
Sample C Female 101.2
Sample D Female 87.5
Ventral forebrain
nTPM: 103.9
Samples: 4

Max nTPM: 108.3
Min nTPM: 99.0
Sample A Male 99.0
Sample B Male 108.3
Sample C Female 106.7
Sample D Female 101.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.6
74047788 Antisense, RP_051214_02_A04, Mouse strain C57BL/6J (56 days, male) 4.1
68269034 Antisense, RP_041208_01_E09, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 3.2
74047788 Antisense, RP_051214_02_A04, Mouse strain C57BL/6J (56 days, male) 5.0
68269034 Antisense, RP_041208_01_E09, Mouse strain C57BL/6J (56 days, male) 1.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.