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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.5 nTPM
HPA:43.5 nTPM
GTEx:35.4 nTPM
FANTOM5:55.4 Scaled Tags Per Million
Pig:9.4 nTPM
Mouse:104.5 nTPM
Allen mouse:4.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.4
2666 Male, age 74, left hemisphere 44.7
2019 Male, age 18, unknown 44.2
1827 Male, age 72, unknown 43.2
2411 Female, age 72, unknown 41.8
2219 Male, age 76, both hemispheres 39.8
1833 Male, age 53, unknown 36.4
1870 Female, age 42, unknown 36.2
2828 Female, age 72, unknown 36.1
2586 Male, age 75, left hemisphere 36.0
1830 Male, age 51, unknown 35.6
Dorsal raphe nucleus
nTPM: 40.3
2750 Male, age 76, both hemispheres 44.3
2298 Female, age 72, unknown 42.4
2047 Male, age 72, unknown 42.1
1828 Male, age 53, unknown 39.7
2016 Female, age 72, unknown 32.9
Inferior colliculus
nTPM: 40.4
2097 Female, age 72, unknown 46.1
1890 Male, age 53, unknown 39.3
1848 Female, age 42, unknown 39.0
2849 Male, age 72, unknown 37.0
Median raphe nucleus
nTPM: 43.5
2220 Male, age 76, midline 43.5
Pedunculopontine tegmental nucleus
nTPM: 39.9
1921 Female, age 85, both hemispheres 44.7
2334 Male, age 80, both hemispheres 42.8
2338 Male, age 61, both hemispheres 32.4
Periaquaductal grey, anterior
nTPM: 41.4
2502 Female, age 75, unknown 42.1
1795 Male, age 51, unknown 41.5
1947 Male, age 18, unknown 40.6
Periaquaductal grey, dorsal
nTPM: 36.8
2464 Female, age 72, unknown 38.0
2850 Male, age 76, both hemispheres 37.0
1840 Male, age 53, unknown 36.2
1831 Male, age 72, unknown 36.0
Periaquaductal grey, lateral
nTPM: 36.0
2272 Male, age 74, both hemispheres 36.6
2053 Male, age 18, unknown 35.8
2140 Male, age 76, both hemispheres 35.5
Pretectal area
nTPM: 43.3
1816 Male, age 51, unknown 52.5
1944 Female, age 72, unknown 52.4
2007 Male, age 72, unknown 51.9
1817 Female, age 42, unknown 48.2
1815 Male, age 53, unknown 44.9
2224 Female, age 72, unknown 41.3
2407 Male, age 75, both hemispheres 40.8
2316 Male, age 76, right hemisphere 37.3
2825 Male, age 18, unknown 36.8
2667 Female, age 75, unknown 35.7
2273 Male, age 74, both hemispheres 34.4
Red nucleus
nTPM: 35.6
2785 Male, age 18, unknown 41.9
1821 Female, age 72, unknown 39.0
2823 Male, age 76, right hemisphere 37.6
2588 Male, age 74, left hemisphere 36.9
2584 Male, age 75, left hemisphere 36.2
1954 Female, age 42, unknown 35.7
2227 Male, age 72, unknown 34.4
2725 Female, age 75, unknown 34.3
2769 Male, age 72, unknown 33.8
2503 Female, age 72, unknown 32.8
1865 Male, age 51, unknown 32.6
1904 Male, age 53, unknown 31.4
Substantia nigra
nTPM: 41.9
1941 Male, age 53, unknown 51.2
1889 Female, age 72, unknown 47.5
1916 Female, age 42, unknown 47.0
2241 Male, age 72, unknown 45.5
1851 Male, age 51, unknown 43.2
2409 Female, age 72, unknown 42.1
2590 Female, age 75, unknown 39.2
2583 Male, age 75, right hemisphere 36.9
2699 Male, age 18, unknown 35.0
2665 Male, age 74, both hemispheres 31.4
Superior colliculus
nTPM: 40.8
2668 Female, age 75, unknown 52.1
2087 Female, age 72, unknown 48.3
1895 Male, age 76, right hemisphere 43.1
2261 Male, age 18, unknown 42.0
1796 Male, age 53, unknown 41.6
1839 Male, age 51, unknown 39.3
2587 Male, age 74, left hemisphere 38.1
2664 Male, age 75, both hemispheres 36.9
1913 Female, age 42, unknown 34.5
1995 Male, age 72, unknown 32.2
Ventral tegmental area
nTPM: 39.0
2410 Female, age 72, unknown 42.4
1915 Female, age 42, unknown 42.1
2218 Male, age 76, both hemispheres 39.8
1942 Male, age 51, unknown 37.8
2021 Male, age 53, unknown 37.6
2223 Female, age 72, unknown 34.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.4
Samples: 139

Max nTPM: 144.4
Min nTPM: 10.3
Std nTPM: 19.5
Median nTPM: 31.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 144.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 108.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 86.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 86.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 78.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 77.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 75.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 69.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 66.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 64.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 63.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.4
FF:10158-103A5 76 years, female 55.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.4
Pig sample Sample description nTPM
Midbrain
nTPM: 9.4
Samples: 4

Max nTPM: 12.0
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 8.1
Sample C Male 12.0
Sample D Male 10.5
Periaqueductal gray
nTPM: 7.8
Samples: 3

Max nTPM: 9.5
Min nTPM: 7.0
Sample B Female 7.0
Sample C Male 9.5
Sample D Male 7.0
Substantia nigra
nTPM: 9.0
Samples: 4

Max nTPM: 12.6
Min nTPM: 5.4
Sample A Female 12.6
Sample B Female 7.2
Sample C Male 10.9
Sample D Male 5.4
Superior colliculi
nTPM: 9.3
Samples: 4

Max nTPM: 12.0
Min nTPM: 5.8
Sample A Female 12.0
Sample B Female 5.8
Sample C Male 10.9
Sample D Male 8.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.5
Samples: 4

Max nTPM: 105.8
Min nTPM: 101.7
Sample A Male 101.7
Sample B Male 105.1
Sample C Female 105.4
Sample D Female 105.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
74047788 Antisense, RP_051214_02_A04, Mouse strain C57BL/6J (56 days, male) 7.5
68269034 Antisense, RP_041208_01_E09, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.