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ATP6AP1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:109.2 nTPM
HPA:109.2 nTPM
GTEx:97.3 nTPM
FANTOM5:270.2 Scaled Tags Per Million
Pig:131.4 nTPM
Mouse:451.2 nTPM
Allen mouse:14.4 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB015218
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 109.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 88.9
2288 Male, age 75, left hemisphere 100.1
1781 Male, age 74, unknown 98.3
2846 Female, age 79, unknown 92.0
1857 Female, age 85, left hemisphere 89.1
2290 Female, age 72, unknown 88.3
1854 Male, age 80, left hemisphere 82.4
2481 Female, age 94, left hemisphere 81.4
2289 Male, age 61, right hemisphere 79.4
Claustrum
nTPM: 103.9
2198 Male, age 80, both hemispheres 119.9
2568 Male, age 61, both hemispheres 110.9
2491 Male, age 75, both hemispheres 107.0
2284 Female, age 91, both hemispheres 103.1
1956 Male, age 74, unknown 102.7
2392 Female, age 94, both hemispheres 101.4
2196 Female, age 79, unknown 100.3
2292 Female, age 85, both hemispheres 98.3
2645 Female, age 72, unknown 91.9
Globus pallidus, externus
nTPM: 84.0
2772 Female, age 79, unknown 99.7
2395 Male, age 75, both hemispheres 99.1
1996 Male, age 80, right hemisphere 85.5
2646 Male, age 61, right hemisphere 73.6
2567 Female, age 72, unknown 62.0
Globus pallidus, internus
nTPM: 87.3
2287 Male, age 75, right hemisphere 115.0
2778 Female, age 91, both hemispheres 97.4
1818 Male, age 74, unknown 86.5
2483 Female, age 94, right hemisphere 81.2
2111 Female, age 85, right hemisphere 79.6
2037 Male, age 80, right hemisphere 78.5
2566 Female, age 72, unknown 72.8
Nucleus accumbens
nTPM: 90.8
1856 Female, age 91, right hemisphere 106.2
2286 Male, age 75, left hemisphere 100.6
1783 Male, age 74, unknown 94.1
1806 Female, age 85, left hemisphere 91.0
2698 Female, age 72, unknown 90.4
2824 Male, age 61, right hemisphere 84.8
2732 Male, age 80, right hemisphere 80.5
2391 Female, age 94, left hemisphere 79.1
Nucleus basalis of Meynert
nTPM: 79.7
2821 Male, age 75, both hemispheres 88.3
2484 Female, age 94, left hemisphere 81.8
2393 Male, age 80, right hemisphere 77.3
2569 Male, age 61, both hemispheres 71.6
Nucleus of the diagonal band
nTPM: 109.2
1812 Female, age 91, both hemispheres 119.6
2775 Male, age 80, right hemisphere 119.0
2195 Female, age 85, both hemispheres 108.9
2029 Male, age 61, right hemisphere 107.3
1979 Male, age 74, unknown 91.0
Olfactory tubercle
nTPM: 108.7
1998 Female, age 91, both hemispheres 124.7
2487 Female, age 94, left hemisphere 111.8
1846 Male, age 80, right hemisphere 110.2
2856 Male, age 75, right hemisphere 88.1
Putamen
nTPM: 82.9
2466 Female, age 79, unknown 95.9
1937 Female, age 91, right hemisphere 92.5
1838 Male, age 80, right hemisphere 85.9
1829 Male, age 74, unknown 84.3
2482 Female, age 94, left hemisphere 84.1
2489 Female, age 72, unknown 70.9
2647 Male, age 75, left hemisphere 66.8
Septal nuclei
nTPM: 102.2
2031 Female, age 72, unknown 126.2
1960 Male, age 74, unknown 120.6
2009 Female, age 91, both hemispheres 105.2
2629 Female, age 94, right hemisphere 102.9
2059 Female, age 85, both hemispheres 92.5
2394 Male, age 61, left hemisphere 89.5
2199 Male, age 80, right hemisphere 78.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 97.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 86.3
Samples: 246

Max nTPM: 158.5
Min nTPM: 42.0
Std nTPM: 23.0
Median nTPM: 83.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 158.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 145.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 141.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 141.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 141.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 138.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 137.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 135.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 135.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 132.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 129.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 97.3
Samples: 246

Max nTPM: 180.8
Min nTPM: 11.1
Std nTPM: 29.7
Median nTPM: 96.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 180.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 173.6
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 167.5
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 166.1
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 162.5
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 159.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 157.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 151.9
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 151.6
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 150.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 146.5
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Brain - Putamen (basal ganglia)
Average nTPM: 88.5
Samples: 205

Max nTPM: 150.1
Min nTPM: 28.2
Std nTPM: 24.8
Median nTPM: 86.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 150.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 149.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 144.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 143.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 143.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 142.1
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 141.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 140.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 137.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 136.5
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 131.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 270.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 130.5
FF:10164-103B2 76 years, female 130.5
Globus pallidus
Scaled Tags Per Million: 125.5
FF:10175-103C4 60 years, female 143.6
FF:10161-103A8 76 years, female 107.5
Nucleus accumbens
Scaled Tags Per Million: 270.2
FF:10037-101F1 23-56 years, mixed 270.2
Putamen
Scaled Tags Per Million: 221.1
FF:10176-103C5 60 years, female 221.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 131.4
Pig sample Sample description nTPM
Caudate
nTPM: 131.4
Samples: 4

Max nTPM: 164.1
Min nTPM: 96.8
Sample A Female 96.8
Sample B Female 129.8
Sample C Male 164.1
Sample D Male 134.7
Putamen
nTPM: 127.9
Samples: 4

Max nTPM: 187.0
Min nTPM: 71.5
Sample A Female 71.5
Sample B Female 107.9
Sample C Male 187.0
Sample D Male 145.1
Septum
nTPM: 89.7
Samples: 4

Max nTPM: 104.0
Min nTPM: 81.1
Sample A Female 89.3
Sample B Female 84.3
Sample C Male 104.0
Sample D Male 81.1
Ventral pallidum
nTPM: 97.8
Samples: 4

Max nTPM: 121.8
Min nTPM: 88.0
Sample A Female 92.5
Sample B Female 88.0
Sample C Male 121.8
Sample D Male 89.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 451.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 370.3
Samples: 4

Max nTPM: 386.6
Min nTPM: 359.8
Sample A Male 374.2
Sample B Male 359.8
Sample C Female 360.7
Sample D Female 386.6
Septum
nTPM: 451.2
Samples: 4

Max nTPM: 496.5
Min nTPM: 396.2
Sample A Male 421.2
Sample B Male 496.5
Sample C Female 490.8
Sample D Female 396.2
Ventral forebrain
nTPM: 414.5
Samples: 4

Max nTPM: 463.9
Min nTPM: 379.4
Sample A Male 379.4
Sample B Male 408.5
Sample C Female 463.9
Sample D Female 406.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 14.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.3
69549631 Antisense, RP_050303_02_G05, Mouse strain C57BL/6J (56 days, male) 13.3
Pallidum
Expression energy: 14.4
69549631 Antisense, RP_050303_02_G05, Mouse strain C57BL/6J (56 days, male) 14.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.