ABOUTMENU
HELP
NEWS
CPSF1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.6 nTPM
HPA:16.6 nTPM
GTEx:50.4 nTPM
FANTOM5:38.1 Scaled Tags Per Million
Pig:21.1 nTPM
Mouse:15.9 nTPM
Allen mouse:1.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.2
2289 Male, age 61, right hemisphere 17.4
2290 Female, age 72, unknown 16.8
1781 Male, age 74, unknown 16.6
2846 Female, age 79, unknown 16.3
1854 Male, age 80, left hemisphere 16.1
2288 Male, age 75, left hemisphere 15.7
1857 Female, age 85, left hemisphere 15.5
2481 Female, age 94, left hemisphere 15.3
Claustrum
nTPM: 16.3
2568 Male, age 61, both hemispheres 17.5
2284 Female, age 91, both hemispheres 17.2
2645 Female, age 72, unknown 17.1
2491 Male, age 75, both hemispheres 16.5
2198 Male, age 80, both hemispheres 16.4
2292 Female, age 85, both hemispheres 16.0
1956 Male, age 74, unknown 15.8
2392 Female, age 94, both hemispheres 15.3
2196 Female, age 79, unknown 14.9
Globus pallidus, externus
nTPM: 14.8
2646 Male, age 61, right hemisphere 15.6
2567 Female, age 72, unknown 15.3
2772 Female, age 79, unknown 14.9
1996 Male, age 80, right hemisphere 14.2
2395 Male, age 75, both hemispheres 14.2
Globus pallidus, internus
nTPM: 14.5
2111 Female, age 85, right hemisphere 15.0
1818 Male, age 74, unknown 14.8
2566 Female, age 72, unknown 14.7
2778 Female, age 91, both hemispheres 14.7
2037 Male, age 80, right hemisphere 14.3
2483 Female, age 94, right hemisphere 14.3
2287 Male, age 75, right hemisphere 13.8
Nucleus accumbens
nTPM: 15.5
1783 Male, age 74, unknown 16.5
2824 Male, age 61, right hemisphere 16.4
1806 Female, age 85, left hemisphere 15.8
1856 Female, age 91, right hemisphere 15.6
2286 Male, age 75, left hemisphere 15.5
2732 Male, age 80, right hemisphere 15.3
2698 Female, age 72, unknown 15.0
2391 Female, age 94, left hemisphere 14.2
Nucleus basalis of Meynert
nTPM: 15.6
2484 Female, age 94, left hemisphere 16.2
2393 Male, age 80, right hemisphere 15.6
2569 Male, age 61, both hemispheres 15.5
2821 Male, age 75, both hemispheres 15.1
Nucleus of the diagonal band
nTPM: 15.7
2029 Male, age 61, right hemisphere 17.1
2195 Female, age 85, both hemispheres 15.8
2775 Male, age 80, right hemisphere 15.7
1979 Male, age 74, unknown 15.3
1812 Female, age 91, both hemispheres 14.7
Olfactory tubercle
nTPM: 15.9
1998 Female, age 91, both hemispheres 16.5
2487 Female, age 94, left hemisphere 16.5
2856 Male, age 75, right hemisphere 15.9
1846 Male, age 80, right hemisphere 14.6
Putamen
nTPM: 16.6
2466 Female, age 79, unknown 18.3
2489 Female, age 72, unknown 17.7
1838 Male, age 80, right hemisphere 16.7
1829 Male, age 74, unknown 16.3
1937 Female, age 91, right hemisphere 16.2
2647 Male, age 75, left hemisphere 16.0
2482 Female, age 94, left hemisphere 15.0
Septal nuclei
nTPM: 15.4
1960 Male, age 74, unknown 16.2
2059 Female, age 85, both hemispheres 16.0
2394 Male, age 61, left hemisphere 15.4
2009 Female, age 91, both hemispheres 15.2
2031 Female, age 72, unknown 15.0
2629 Female, age 94, right hemisphere 15.0
2199 Male, age 80, right hemisphere 14.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 50.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.9
Samples: 246

Max nTPM: 103.4
Min nTPM: 12.2
Std nTPM: 16.1
Median nTPM: 45.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 103.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 102.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 89.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 89.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 89.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 86.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 81.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 81.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 80.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 79.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 77.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 46.2
Samples: 246

Max nTPM: 145.4
Min nTPM: 12.9
Std nTPM: 21.0
Median nTPM: 42.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 145.4
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 125.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 123.7
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 118.6
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 105.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 101.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 96.8
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 95.3
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 91.9
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 89.4
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 89.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 50.4
Samples: 205

Max nTPM: 106.1
Min nTPM: 16.6
Std nTPM: 18.2
Median nTPM: 47.1
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 106.1
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 101.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 100.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 99.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 94.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 91.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 89.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 89.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 89.5
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 86.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 85.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 38.1
FF:10164-103B2 76 years, female 38.1
Globus pallidus
Scaled Tags Per Million: 28.7
FF:10161-103A8 76 years, female 33.7
FF:10175-103C4 60 years, female 23.6
Nucleus accumbens
Scaled Tags Per Million: 33.6
FF:10037-101F1 23-56 years, mixed 33.6
Putamen
Scaled Tags Per Million: 24.6
FF:10176-103C5 60 years, female 24.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.1
Pig sample Sample description nTPM
Caudate
nTPM: 21.1
Samples: 4

Max nTPM: 24.9
Min nTPM: 17.4
Sample A Female 17.4
Sample B Female 24.3
Sample C Male 24.9
Sample D Male 17.9
Putamen
nTPM: 19.7
Samples: 4

Max nTPM: 24.0
Min nTPM: 15.6
Sample A Female 18.4
Sample B Female 15.6
Sample C Male 20.6
Sample D Male 24.0
Septum
nTPM: 21.1
Samples: 4

Max nTPM: 24.2
Min nTPM: 19.8
Sample A Female 20.4
Sample B Female 19.8
Sample C Male 24.2
Sample D Male 20.0
Ventral pallidum
nTPM: 20.4
Samples: 4

Max nTPM: 24.7
Min nTPM: 14.0
Sample A Female 14.0
Sample B Female 21.0
Sample C Male 24.7
Sample D Male 21.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 15.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.6
Samples: 4

Max nTPM: 16.1
Min nTPM: 9.1
Sample A Male 16.1
Sample B Male 15.6
Sample C Female 13.7
Sample D Female 9.1
Septum
nTPM: 15.9
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.8
Sample A Male 16.8
Sample B Male 16.7
Sample C Female 17.3
Sample D Female 12.8
Ventral forebrain
nTPM: 15.4
Samples: 4

Max nTPM: 17.0
Min nTPM: 13.3
Sample A Male 13.3
Sample B Male 16.3
Sample C Female 14.9
Sample D Female 17.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
69608028 Antisense, RP_050426_03_D03, Mouse strain C57BL/6J (56 days, male) 1.8
Pallidum
Expression energy: 1.9
69608028 Antisense, RP_050426_03_D03, Mouse strain C57BL/6J (56 days, male) 1.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.