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CPSF1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA:14.9 nTPM
GTEx:30.3 nTPM
FANTOM5:37.5 Scaled Tags Per Million
Pig:25.1 nTPM
Mouse:14.5 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.6
2586 Male, age 75, left hemisphere 15.2
2219 Male, age 76, both hemispheres 15.0
1827 Male, age 72, unknown 14.9
2828 Female, age 72, unknown 14.9
2019 Male, age 18, unknown 14.8
2666 Male, age 74, left hemisphere 14.5
1830 Male, age 51, unknown 14.4
1870 Female, age 42, unknown 14.4
2411 Female, age 72, unknown 14.4
1833 Male, age 53, unknown 13.9
Dorsal raphe nucleus
nTPM: 14.6
2047 Male, age 72, unknown 15.1
1828 Male, age 53, unknown 14.8
2298 Female, age 72, unknown 14.5
2750 Male, age 76, both hemispheres 14.5
2016 Female, age 72, unknown 14.1
Inferior colliculus
nTPM: 14.5
2097 Female, age 72, unknown 14.8
1848 Female, age 42, unknown 14.7
1890 Male, age 53, unknown 14.2
2849 Male, age 72, unknown 14.2
Median raphe nucleus
nTPM: 14.2
2220 Male, age 76, midline 14.2
Pedunculopontine tegmental nucleus
nTPM: 14.6
2338 Male, age 61, both hemispheres 14.8
2334 Male, age 80, both hemispheres 14.6
1921 Female, age 85, both hemispheres 14.5
Periaquaductal grey, anterior
nTPM: 14.9
1795 Male, age 51, unknown 15.4
1947 Male, age 18, unknown 15.0
2502 Female, age 75, unknown 14.4
Periaquaductal grey, dorsal
nTPM: 13.8
2464 Female, age 72, unknown 14.2
1831 Male, age 72, unknown 13.8
1840 Male, age 53, unknown 13.8
2850 Male, age 76, both hemispheres 13.5
Periaquaductal grey, lateral
nTPM: 14.4
2272 Male, age 74, both hemispheres 15.2
2053 Male, age 18, unknown 14.1
2140 Male, age 76, both hemispheres 13.9
Pretectal area
nTPM: 14.7
2007 Male, age 72, unknown 15.3
2407 Male, age 75, both hemispheres 15.3
2667 Female, age 75, unknown 15.1
1816 Male, age 51, unknown 14.9
2273 Male, age 74, both hemispheres 14.8
2825 Male, age 18, unknown 14.7
1944 Female, age 72, unknown 14.6
1817 Female, age 42, unknown 14.5
2316 Male, age 76, right hemisphere 14.5
2224 Female, age 72, unknown 14.3
1815 Male, age 53, unknown 14.2
Red nucleus
nTPM: 14.6
2584 Male, age 75, left hemisphere 15.3
2725 Female, age 75, unknown 15.1
2785 Male, age 18, unknown 15.1
2769 Male, age 72, unknown 15.0
2227 Male, age 72, unknown 14.9
2588 Male, age 74, left hemisphere 14.8
1904 Male, age 53, unknown 14.4
2503 Female, age 72, unknown 14.4
1821 Female, age 72, unknown 14.2
1865 Male, age 51, unknown 14.1
2823 Male, age 76, right hemisphere 14.1
1954 Female, age 42, unknown 14.0
Substantia nigra
nTPM: 14.1
1941 Male, age 53, unknown 15.1
2583 Male, age 75, right hemisphere 14.8
2590 Female, age 75, unknown 14.8
2665 Male, age 74, both hemispheres 14.5
1851 Male, age 51, unknown 14.2
1889 Female, age 72, unknown 14.0
1916 Female, age 42, unknown 13.9
2699 Male, age 18, unknown 13.6
2409 Female, age 72, unknown 13.0
2241 Male, age 72, unknown 12.9
Superior colliculus
nTPM: 14.5
2664 Male, age 75, both hemispheres 15.1
1796 Male, age 53, unknown 15.0
2087 Female, age 72, unknown 14.8
2261 Male, age 18, unknown 14.6
1895 Male, age 76, right hemisphere 14.5
1913 Female, age 42, unknown 14.5
1839 Male, age 51, unknown 14.4
1995 Male, age 72, unknown 14.3
2587 Male, age 74, left hemisphere 14.2
2668 Female, age 75, unknown 13.5
Ventral tegmental area
nTPM: 14.1
1942 Male, age 51, unknown 14.2
2410 Female, age 72, unknown 14.2
1915 Female, age 42, unknown 14.1
2021 Male, age 53, unknown 14.1
2223 Female, age 72, unknown 14.1
2218 Male, age 76, both hemispheres 13.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.3
Samples: 139

Max nTPM: 66.3
Min nTPM: 12.5
Std nTPM: 11.6
Median nTPM: 27.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 66.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 64.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 62.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 59.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 53.7
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 53.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 52.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 51.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 51.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 50.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 49.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.5
FF:10158-103A5 76 years, female 37.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.1
Pig sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 26.0
Min nTPM: 17.5
Sample A Female 26.0
Sample B Female 17.5
Sample C Male 24.8
Sample D Male 21.0
Periaqueductal gray
nTPM: 19.0
Samples: 3

Max nTPM: 20.4
Min nTPM: 17.7
Sample B Female 17.7
Sample C Male 18.9
Sample D Male 20.4
Substantia nigra
nTPM: 23.1
Samples: 4

Max nTPM: 23.4
Min nTPM: 22.7
Sample A Female 23.4
Sample B Female 22.7
Sample C Male 23.0
Sample D Male 23.4
Superior colliculi
nTPM: 25.1
Samples: 4

Max nTPM: 30.6
Min nTPM: 22.5
Sample A Female 23.0
Sample B Female 30.6
Sample C Male 24.1
Sample D Male 22.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 15.6
Min nTPM: 12.1
Sample A Male 15.2
Sample B Male 12.1
Sample C Female 15.3
Sample D Female 15.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
69608028 Antisense, RP_050426_03_D03, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.