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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.9 nTPM
HPA:19.9 nTPM
GTEx:23.5 nTPM
FANTOM5:42.3 Scaled Tags Per Million
Pig:11.4 nTPM
Mouse:24.4 nTPM
Allen mouse:4.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.8
2288 Male, age 75, left hemisphere 19.6
1781 Male, age 74, unknown 18.8
2481 Female, age 94, left hemisphere 18.5
2290 Female, age 72, unknown 18.0
2846 Female, age 79, unknown 17.6
2289 Male, age 61, right hemisphere 17.2
1854 Male, age 80, left hemisphere 16.7
1857 Female, age 85, left hemisphere 16.1
Claustrum
nTPM: 18.2
2292 Female, age 85, both hemispheres 19.8
1956 Male, age 74, unknown 19.4
2196 Female, age 79, unknown 19.0
2198 Male, age 80, both hemispheres 19.0
2284 Female, age 91, both hemispheres 18.6
2491 Male, age 75, both hemispheres 17.9
2568 Male, age 61, both hemispheres 17.4
2392 Female, age 94, both hemispheres 16.9
2645 Female, age 72, unknown 15.6
Globus pallidus, externus
nTPM: 18.8
2772 Female, age 79, unknown 21.5
1996 Male, age 80, right hemisphere 20.7
2646 Male, age 61, right hemisphere 18.6
2395 Male, age 75, both hemispheres 17.4
2567 Female, age 72, unknown 16.0
Globus pallidus, internus
nTPM: 19.9
2778 Female, age 91, both hemispheres 23.0
2287 Male, age 75, right hemisphere 22.2
2111 Female, age 85, right hemisphere 20.8
2483 Female, age 94, right hemisphere 19.1
1818 Male, age 74, unknown 18.2
2566 Female, age 72, unknown 18.2
2037 Male, age 80, right hemisphere 18.0
Nucleus accumbens
nTPM: 18.5
2286 Male, age 75, left hemisphere 20.1
1783 Male, age 74, unknown 19.9
1806 Female, age 85, left hemisphere 18.5
2391 Female, age 94, left hemisphere 18.4
2732 Male, age 80, right hemisphere 18.2
2698 Female, age 72, unknown 18.1
1856 Female, age 91, right hemisphere 18.0
2824 Male, age 61, right hemisphere 16.9
Nucleus basalis of Meynert
nTPM: 16.5
2569 Male, age 61, both hemispheres 17.7
2484 Female, age 94, left hemisphere 17.1
2821 Male, age 75, both hemispheres 16.0
2393 Male, age 80, right hemisphere 15.1
Nucleus of the diagonal band
nTPM: 17.8
2195 Female, age 85, both hemispheres 18.1
2029 Male, age 61, right hemisphere 17.9
2775 Male, age 80, right hemisphere 17.9
1812 Female, age 91, both hemispheres 17.8
1979 Male, age 74, unknown 17.5
Olfactory tubercle
nTPM: 17.4
2487 Female, age 94, left hemisphere 18.3
1998 Female, age 91, both hemispheres 18.1
1846 Male, age 80, right hemisphere 17.1
2856 Male, age 75, right hemisphere 16.1
Putamen
nTPM: 17.3
2482 Female, age 94, left hemisphere 18.4
1937 Female, age 91, right hemisphere 18.2
2466 Female, age 79, unknown 18.2
1829 Male, age 74, unknown 17.6
1838 Male, age 80, right hemisphere 16.4
2489 Female, age 72, unknown 16.4
2647 Male, age 75, left hemisphere 15.9
Septal nuclei
nTPM: 17.1
2031 Female, age 72, unknown 19.0
1960 Male, age 74, unknown 18.6
2059 Female, age 85, both hemispheres 17.0
2009 Female, age 91, both hemispheres 16.9
2629 Female, age 94, right hemisphere 16.7
2394 Male, age 61, left hemisphere 16.1
2199 Male, age 80, right hemisphere 15.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.5
Samples: 246

Max nTPM: 33.5
Min nTPM: 8.4
Std nTPM: 3.4
Median nTPM: 21.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 33.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 30.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 29.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 29.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 29.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 29.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 28.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 28.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 28.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 28.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 28.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.3
Samples: 246

Max nTPM: 37.0
Min nTPM: 14.2
Std nTPM: 3.7
Median nTPM: 22.0
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 37.0
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 35.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 35.0
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 33.8
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 31.3
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 30.9
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 30.8
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 30.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 30.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 30.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 29.9
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Brain - Putamen (basal ganglia)
Average nTPM: 23.5
Samples: 205

Max nTPM: 42.9
Min nTPM: 13.4
Std nTPM: 4.0
Median nTPM: 23.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 42.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 35.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 34.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 32.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 32.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 31.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 31.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 31.0
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 30.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 30.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 30.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 42.3
FF:10164-103B2 76 years, female 42.3
Globus pallidus
Scaled Tags Per Million: 31.5
FF:10161-103A8 76 years, female 35.4
FF:10175-103C4 60 years, female 27.6
Nucleus accumbens
Scaled Tags Per Million: 35.2
FF:10037-101F1 23-56 years, mixed 35.2
Putamen
Scaled Tags Per Million: 36.7
FF:10176-103C5 60 years, female 36.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.4
Pig sample Sample description nTPM
Caudate
nTPM: 10.5
Samples: 4

Max nTPM: 11.7
Min nTPM: 9.2
Sample A Female 9.7
Sample B Female 11.4
Sample C Male 11.7
Sample D Male 9.2
Putamen
nTPM: 11.4
Samples: 4

Max nTPM: 12.4
Min nTPM: 9.0
Sample A Female 12.1
Sample B Female 9.0
Sample C Male 11.9
Sample D Male 12.4
Septum
nTPM: 10.9
Samples: 4

Max nTPM: 11.7
Min nTPM: 9.6
Sample A Female 11.7
Sample B Female 10.4
Sample C Male 11.7
Sample D Male 9.6
Ventral pallidum
nTPM: 10.9
Samples: 4

Max nTPM: 12.4
Min nTPM: 8.5
Sample A Female 8.5
Sample B Female 10.4
Sample C Male 12.4
Sample D Male 12.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 24.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.7
Samples: 4

Max nTPM: 24.5
Min nTPM: 22.5
Sample A Male 24.5
Sample B Male 23.9
Sample C Female 22.5
Sample D Female 23.7
Septum
nTPM: 23.8
Samples: 4

Max nTPM: 24.5
Min nTPM: 23.2
Sample A Male 23.2
Sample B Male 23.4
Sample C Female 24.5
Sample D Female 24.0
Ventral forebrain
nTPM: 24.4
Samples: 4

Max nTPM: 24.9
Min nTPM: 24.0
Sample A Male 24.9
Sample B Male 24.6
Sample C Female 24.0
Sample D Female 24.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.3
69080055 Antisense, RP_050324_01_G06, Mouse strain C57BL/6J (56 days, male) 4.3
Pallidum
Expression energy: 4.1
69080055 Antisense, RP_050324_01_G06, Mouse strain C57BL/6J (56 days, male) 4.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.