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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:23.8 nTPM
HPA:23.8 nTPM
GTEx:43.5 nTPM
FANTOM5:19.4 Scaled Tags Per Million
Pig:4.7 nTPM
Mouse:4.5 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody CAB017700
Glial cells High
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.8
Sample id Sample description nTPM
Hippocampus
nTPM: 13.9
1911 Female, age 85, right hemisphere 22.3
2621 Female, age 67, right hemisphere 14.8
1898 Male, age 80, left hemisphere 14.7
2529 Female, age 94, left hemisphere 11.5
1855 Male, age 76, left hemisphere 10.2
2148 Female, age 91, left hemisphere 10.2
Dentate gyrus
nTPM: 15.0
2530 Female, age 94, left hemisphere 27.7
2528 Male, age 74, both hemispheres 15.6
2246 Female, age 85, both hemispheres 13.9
2531 Female, age 67, both hemispheres 13.1
2010 Male, age 76, both hemispheres 11.7
1927 Female, age 91, both hemispheres 7.8
Entorhinal gyrus
nTPM: 19.0
2117 Female, age 91, right hemisphere 33.4
2764 Male, age 80, right hemisphere 24.7
2613 Female, age 94, left hemisphere 18.3
1938 Female, age 85, left hemisphere 14.7
2686 Male, age 75, right hemisphere 14.1
1787 Male, age 76, left hemisphere 8.8
Hippocampus, CA1
nTPM: 10.9
2082 Female, age 91, right hemisphere 15.6
2527 Male, age 74, both hemispheres 15.4
1873 Female, age 85, both hemispheres 13.7
2749 Male, age 80, left hemisphere 9.8
2045 Male, age 76, both hemispheres 0.3
Hippocampus, CA2
nTPM: 15.0
2249 Male, age 74, both hemispheres 25.2
1963 Male, age 80, left hemisphere 17.1
2437 Female, age 94, left hemisphere 16.6
2113 Female, age 91, right hemisphere 13.3
1940 Female, age 85, left hemisphere 12.6
1892 Male, age 76, both hemispheres 5.0
Hippocampus, CA3
nTPM: 11.2
1891 Female, age 85, both hemispheres 22.0
2620 Female, age 94, left hemisphere 18.7
2436 Male, age 74, both hemispheres 8.6
1867 Male, age 76, both hemispheres 7.3
2861 Female, age 67, both hemispheres 6.6
2137 Male, age 80, left hemisphere 4.1
Parahippocampal cortex
nTPM: 12.5
2692 Male, age 74, both hemispheres 22.0
2532 Female, age 72, left hemisphere 20.0
1990 Female, age 91, right hemisphere 17.4
2693 Female, age 94, both hemispheres 17.1
1850 Male, age 80, both hemispheres 12.8
2245 Female, age 91, both hemispheres 10.3
1933 Female, age 85, both hemispheres 9.0
2622 Female, age 67, right hemisphere 6.2
2018 Male, age 76, both hemispheres 6.1
2250 Female, age 67, right hemisphere 4.6
Perirhinal gyrus
nTPM: 6.0
1794 Male, age 80, right hemisphere 9.8
2521 Female, age 94, right hemisphere 7.6
2848 Male, age 76, right hemisphere 5.8
1847 Female, age 91, left hemisphere 3.5
1841 Female, age 85, right hemisphere 3.4
Subiculum
nTPM: 23.8
2042 Male, age 76, both hemispheres 35.9
1901 Male, age 80, both hemispheres 30.3
1977 Female, age 85, both hemispheres 23.8
2619 Male, age 74, both hemispheres 20.8
2438 Female, age 94, left hemisphere 17.4
2729 Female, age 91, right hemisphere 14.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.5
Samples: 197

Max nTPM: 149.6
Min nTPM: 3.8
Std nTPM: 29.3
Median nTPM: 36.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 149.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 139.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 137.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 131.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 125.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 117.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 116.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 105.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 105.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 104.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 104.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 19.4
FF:10169-103B7 60 years, female 21.9
FF:10153-102I9 76 years, female 16.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.7
Samples: 4

Max nTPM: 7.5
Min nTPM: 2.2
Sample A Female 5.8
Sample B Female 3.4
Sample C Male 7.5
Sample D Male 2.2
Entorhinal cortex
nTPM: 2.5
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 2.5
Sample C Male 2.6
Sample D Male 2.9
Subiculum
nTPM: 2.8
Samples: 4

Max nTPM: 2.8
Min nTPM: 2.7
Sample A Female 2.8
Sample B Female 2.8
Sample C Male 2.7
Sample D Male 2.7
Ventral hippocampus
nTPM: 3.5
Samples: 4

Max nTPM: 4.7
Min nTPM: 2.1
Sample A Female 3.3
Sample B Female 2.1
Sample C Male 4.0
Sample D Male 4.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 4.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.5
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.1
Sample A Male 5.1
Sample B Male 4.4
Sample C Female 4.2
Sample D Female 4.1
Hippocampal formation
nTPM: 4.5
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.4
Sample A Male 3.4
Sample B Male 3.5
Sample C Female 5.4
Sample D Female 5.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
69059801 Antisense, RP_050317_04_A06, Mouse strain C57BL/6J (56 days, male) 0.6
73617582 Antisense, RP_051130_02_A08, Mouse strain C57BL/6J (56 days, male) 0.3
77620357 Antisense, RP_070205_01_C04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.