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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.9 nTPM
HPA:73.9 nTPM
GTEx:66.9 nTPM
FANTOM5:108.4 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:6.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.8
1830 Male, age 51, unknown 64.4
2411 Female, age 72, unknown 64.0
2019 Male, age 18, unknown 63.5
1833 Male, age 53, unknown 57.9
1870 Female, age 42, unknown 55.7
2828 Female, age 72, unknown 43.9
2586 Male, age 75, left hemisphere 34.0
2666 Male, age 74, left hemisphere 33.1
2219 Male, age 76, both hemispheres 32.7
1827 Male, age 72, unknown 29.1
Dorsal raphe nucleus
nTPM: 39.9
2750 Male, age 76, both hemispheres 105.3
1828 Male, age 53, unknown 31.8
2016 Female, age 72, unknown 28.1
2047 Male, age 72, unknown 20.6
2298 Female, age 72, unknown 13.3
Inferior colliculus
nTPM: 25.8
1848 Female, age 42, unknown 28.3
1890 Male, age 53, unknown 28.1
2849 Male, age 72, unknown 27.2
2097 Female, age 72, unknown 19.6
Median raphe nucleus
nTPM: 37.4
2220 Male, age 76, midline 37.4
Pedunculopontine tegmental nucleus
nTPM: 41.7
2334 Male, age 80, both hemispheres 52.3
2338 Male, age 61, both hemispheres 36.5
1921 Female, age 85, both hemispheres 36.4
Periaquaductal grey, anterior
nTPM: 21.5
1947 Male, age 18, unknown 23.9
2502 Female, age 75, unknown 22.9
1795 Male, age 51, unknown 17.6
Periaquaductal grey, dorsal
nTPM: 14.5
2464 Female, age 72, unknown 25.0
1831 Male, age 72, unknown 20.4
1840 Male, age 53, unknown 6.9
2850 Male, age 76, both hemispheres 5.7
Periaquaductal grey, lateral
nTPM: 21.0
2272 Male, age 74, both hemispheres 31.2
2053 Male, age 18, unknown 24.5
2140 Male, age 76, both hemispheres 7.3
Pretectal area
nTPM: 27.0
2316 Male, age 76, right hemisphere 41.7
1815 Male, age 53, unknown 39.0
2407 Male, age 75, both hemispheres 33.7
2007 Male, age 72, unknown 29.6
1817 Female, age 42, unknown 26.9
2825 Male, age 18, unknown 26.8
2667 Female, age 75, unknown 25.0
2273 Male, age 74, both hemispheres 24.2
2224 Female, age 72, unknown 18.6
1944 Female, age 72, unknown 16.5
1816 Male, age 51, unknown 14.8
Red nucleus
nTPM: 73.9
2823 Male, age 76, right hemisphere 113.0
2769 Male, age 72, unknown 83.4
1865 Male, age 51, unknown 83.0
2227 Male, age 72, unknown 78.8
1904 Male, age 53, unknown 78.4
1821 Female, age 72, unknown 72.9
2588 Male, age 74, left hemisphere 68.6
2785 Male, age 18, unknown 68.4
2503 Female, age 72, unknown 63.7
2584 Male, age 75, left hemisphere 62.4
1954 Female, age 42, unknown 58.7
2725 Female, age 75, unknown 55.4
Substantia nigra
nTPM: 32.1
2583 Male, age 75, right hemisphere 47.9
1851 Male, age 51, unknown 40.9
2409 Female, age 72, unknown 39.1
1889 Female, age 72, unknown 38.5
2590 Female, age 75, unknown 33.9
2699 Male, age 18, unknown 30.8
1941 Male, age 53, unknown 28.7
1916 Female, age 42, unknown 23.6
2665 Male, age 74, both hemispheres 18.6
2241 Male, age 72, unknown 18.5
Superior colliculus
nTPM: 35.2
1995 Male, age 72, unknown 55.2
1913 Female, age 42, unknown 52.0
1895 Male, age 76, right hemisphere 44.2
2587 Male, age 74, left hemisphere 41.7
2668 Female, age 75, unknown 39.2
1839 Male, age 51, unknown 37.9
1796 Male, age 53, unknown 28.1
2087 Female, age 72, unknown 19.7
2664 Male, age 75, both hemispheres 17.5
2261 Male, age 18, unknown 16.2
Ventral tegmental area
nTPM: 43.5
2223 Female, age 72, unknown 73.3
2410 Female, age 72, unknown 48.6
2218 Male, age 76, both hemispheres 45.4
2021 Male, age 53, unknown 34.9
1942 Male, age 51, unknown 31.9
1915 Female, age 42, unknown 27.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.9
Samples: 139

Max nTPM: 314.3
Min nTPM: 15.6
Std nTPM: 41.9
Median nTPM: 56.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 314.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 220.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 159.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 159.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 157.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 157.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 156.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 145.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 139.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 139.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 134.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 108.4
FF:10158-103A5 76 years, female 108.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.8
Pig sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 16.7
Min nTPM: 5.4
Sample A Female 16.7
Sample B Female 7.6
Sample C Male 5.8
Sample D Male 5.4
Periaqueductal gray
nTPM: 6.2
Samples: 3

Max nTPM: 6.6
Min nTPM: 6.0
Sample B Female 6.6
Sample C Male 6.1
Sample D Male 6.0
Substantia nigra
nTPM: 8.5
Samples: 4

Max nTPM: 11.0
Min nTPM: 6.0
Sample A Female 7.0
Sample B Female 6.0
Sample C Male 9.9
Sample D Male 11.0
Superior colliculi
nTPM: 7.2
Samples: 4

Max nTPM: 9.2
Min nTPM: 5.2
Sample A Female 6.7
Sample B Female 5.2
Sample C Male 9.2
Sample D Male 7.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.4
Sample A Male 7.3
Sample B Male 5.4
Sample C Female 5.6
Sample D Female 5.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69059801 Antisense, RP_050317_04_A06, Mouse strain C57BL/6J (56 days, male) 0.4
73617582 Antisense, RP_051130_02_A08, Mouse strain C57BL/6J (56 days, male) 0.3
77620357 Antisense, RP_070205_01_C04, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.