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CHMP2B
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:20.2 nTPM
HPA:20.2 nTPM
GTEx:19.7 nTPM
FANTOM5:96.1 Scaled Tags Per Million
Pig:42.6 nTPM
Mouse:70.6 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035069
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.1
2481 Female, age 94, left hemisphere 16.3
2288 Male, age 75, left hemisphere 16.2
2846 Female, age 79, unknown 15.9
1857 Female, age 85, left hemisphere 15.7
2290 Female, age 72, unknown 15.5
1854 Male, age 80, left hemisphere 14.3
1781 Male, age 74, unknown 13.8
2289 Male, age 61, right hemisphere 13.2
Claustrum
nTPM: 14.4
2292 Female, age 85, both hemispheres 15.6
2392 Female, age 94, both hemispheres 15.4
1956 Male, age 74, unknown 15.3
2196 Female, age 79, unknown 14.8
2491 Male, age 75, both hemispheres 14.8
2198 Male, age 80, both hemispheres 14.0
2568 Male, age 61, both hemispheres 13.8
2284 Female, age 91, both hemispheres 13.7
2645 Female, age 72, unknown 12.6
Globus pallidus, externus
nTPM: 18.5
1996 Male, age 80, right hemisphere 21.2
2772 Female, age 79, unknown 20.5
2395 Male, age 75, both hemispheres 20.4
2646 Male, age 61, right hemisphere 16.7
2567 Female, age 72, unknown 13.4
Globus pallidus, internus
nTPM: 20.2
2287 Male, age 75, right hemisphere 26.4
2778 Female, age 91, both hemispheres 23.4
2111 Female, age 85, right hemisphere 21.0
1818 Male, age 74, unknown 18.5
2037 Male, age 80, right hemisphere 17.8
2566 Female, age 72, unknown 17.3
2483 Female, age 94, right hemisphere 16.7
Nucleus accumbens
nTPM: 15.5
2391 Female, age 94, left hemisphere 19.4
2286 Male, age 75, left hemisphere 17.0
1806 Female, age 85, left hemisphere 15.9
2698 Female, age 72, unknown 15.3
2824 Male, age 61, right hemisphere 14.4
2732 Male, age 80, right hemisphere 14.3
1783 Male, age 74, unknown 13.7
1856 Female, age 91, right hemisphere 13.7
Nucleus basalis of Meynert
nTPM: 14.9
2569 Male, age 61, both hemispheres 16.2
2821 Male, age 75, both hemispheres 16.2
2393 Male, age 80, right hemisphere 13.8
2484 Female, age 94, left hemisphere 13.5
Nucleus of the diagonal band
nTPM: 14.5
1812 Female, age 91, both hemispheres 15.7
2195 Female, age 85, both hemispheres 15.1
2775 Male, age 80, right hemisphere 14.8
1979 Male, age 74, unknown 13.7
2029 Male, age 61, right hemisphere 13.4
Olfactory tubercle
nTPM: 14.0
1846 Male, age 80, right hemisphere 14.6
2856 Male, age 75, right hemisphere 14.5
2487 Female, age 94, left hemisphere 14.0
1998 Female, age 91, both hemispheres 13.0
Putamen
nTPM: 14.2
2482 Female, age 94, left hemisphere 16.0
1829 Male, age 74, unknown 15.2
2466 Female, age 79, unknown 15.0
1838 Male, age 80, right hemisphere 14.1
2647 Male, age 75, left hemisphere 13.7
1937 Female, age 91, right hemisphere 13.6
2489 Female, age 72, unknown 12.2
Septal nuclei
nTPM: 14.7
2031 Female, age 72, unknown 15.9
2394 Male, age 61, left hemisphere 15.2
2199 Male, age 80, right hemisphere 14.9
1960 Male, age 74, unknown 14.7
2059 Female, age 85, both hemispheres 14.6
2629 Female, age 94, right hemisphere 14.4
2009 Female, age 91, both hemispheres 13.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 19.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.4
Samples: 246

Max nTPM: 49.9
Min nTPM: 12.8
Std nTPM: 3.9
Median nTPM: 18.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 49.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 32.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 31.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 29.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 29.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 28.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 28.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 28.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 28.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 28.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 27.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.0
Samples: 246

Max nTPM: 39.4
Min nTPM: 9.1
Std nTPM: 4.5
Median nTPM: 18.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 39.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 36.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 32.1
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 31.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 30.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 30.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 29.1
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 28.8
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 28.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 28.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 28.1
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Brain - Putamen (basal ganglia)
Average nTPM: 19.7
Samples: 205

Max nTPM: 35.1
Min nTPM: 12.6
Std nTPM: 3.7
Median nTPM: 19.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 35.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 32.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 32.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 31.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 30.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 30.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 28.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 27.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 26.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 26.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 26.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.1
FF:10164-103B2 76 years, female 63.1
Globus pallidus
Scaled Tags Per Million: 96.1
FF:10175-103C4 60 years, female 104.9
FF:10161-103A8 76 years, female 87.2
Nucleus accumbens
Scaled Tags Per Million: 65.3
FF:10037-101F1 23-56 years, mixed 65.3
Putamen
Scaled Tags Per Million: 72.1
FF:10176-103C5 60 years, female 72.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.6
Pig sample Sample description nTPM
Caudate
nTPM: 28.2
Samples: 4

Max nTPM: 31.0
Min nTPM: 25.2
Sample A Female 30.6
Sample B Female 25.9
Sample C Male 31.0
Sample D Male 25.2
Putamen
nTPM: 42.6
Samples: 4

Max nTPM: 51.1
Min nTPM: 31.2
Sample A Female 47.8
Sample B Female 31.2
Sample C Male 51.1
Sample D Male 40.2
Septum
nTPM: 38.0
Samples: 4

Max nTPM: 44.9
Min nTPM: 31.6
Sample A Female 37.9
Sample B Female 31.6
Sample C Male 44.9
Sample D Male 37.6
Ventral pallidum
nTPM: 36.5
Samples: 4

Max nTPM: 41.5
Min nTPM: 29.3
Sample A Female 29.3
Sample B Female 38.2
Sample C Male 41.5
Sample D Male 37.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 70.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 70.5
Samples: 4

Max nTPM: 76.7
Min nTPM: 63.8
Sample A Male 69.6
Sample B Male 63.8
Sample C Female 72.0
Sample D Female 76.7
Septum
nTPM: 60.3
Samples: 4

Max nTPM: 62.4
Min nTPM: 56.8
Sample A Male 56.8
Sample B Male 59.6
Sample C Female 62.4
Sample D Female 62.3
Ventral forebrain
nTPM: 65.6
Samples: 4

Max nTPM: 67.8
Min nTPM: 61.3
Sample A Male 67.7
Sample B Male 61.3
Sample C Female 67.8
Sample D Female 65.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
70474809 Antisense, RP_050623_01_A08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
70474809 Antisense, RP_050623_01_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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