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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:49.8 nTPM
HPA:49.8 nTPM
GTEx:52.8 nTPM
FANTOM5:63.8 Scaled Tags Per Million
Pig:8.4 nTPM
Mouse:88.4 nTPM
Allen mouse:15.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA064978Antibody CAB033965
Glial cells Not detectedLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.8
Sample id Sample description nTPM
Hippocampus
nTPM: 49.8
1898 Male, age 80, left hemisphere 55.3
2529 Female, age 94, left hemisphere 53.3
2148 Female, age 91, left hemisphere 49.7
1855 Male, age 76, left hemisphere 48.4
1911 Female, age 85, right hemisphere 47.3
2621 Female, age 67, right hemisphere 44.9
Dentate gyrus
nTPM: 49.8
2528 Male, age 74, both hemispheres 59.2
2530 Female, age 94, left hemisphere 56.2
2010 Male, age 76, both hemispheres 52.8
1927 Female, age 91, both hemispheres 46.3
2246 Female, age 85, both hemispheres 44.1
2531 Female, age 67, both hemispheres 40.1
Entorhinal gyrus
nTPM: 45.7
2117 Female, age 91, right hemisphere 53.2
1787 Male, age 76, left hemisphere 49.8
1938 Female, age 85, left hemisphere 47.6
2764 Male, age 80, right hemisphere 46.0
2613 Female, age 94, left hemisphere 40.6
2686 Male, age 75, right hemisphere 37.0
Hippocampus, CA1
nTPM: 48.1
2749 Male, age 80, left hemisphere 51.8
2527 Male, age 74, both hemispheres 49.4
1873 Female, age 85, both hemispheres 48.0
2045 Male, age 76, both hemispheres 46.3
2082 Female, age 91, right hemisphere 45.1
Hippocampus, CA2
nTPM: 49.7
2249 Male, age 74, both hemispheres 55.9
1963 Male, age 80, left hemisphere 53.0
1940 Female, age 85, left hemisphere 50.1
2113 Female, age 91, right hemisphere 48.6
1892 Male, age 76, both hemispheres 45.6
2437 Female, age 94, left hemisphere 45.0
Hippocampus, CA3
nTPM: 47.0
2436 Male, age 74, both hemispheres 50.2
1891 Female, age 85, both hemispheres 49.1
2620 Female, age 94, left hemisphere 48.2
1867 Male, age 76, both hemispheres 47.0
2861 Female, age 67, both hemispheres 44.1
2137 Male, age 80, left hemisphere 43.3
Parahippocampal cortex
nTPM: 44.4
2250 Female, age 67, right hemisphere 48.3
2018 Male, age 76, both hemispheres 48.1
1850 Male, age 80, both hemispheres 47.6
1990 Female, age 91, right hemisphere 47.4
1933 Female, age 85, both hemispheres 46.4
2245 Female, age 91, both hemispheres 44.4
2692 Male, age 74, both hemispheres 42.9
2532 Female, age 72, left hemisphere 42.0
2693 Female, age 94, both hemispheres 38.7
2622 Female, age 67, right hemisphere 38.3
Perirhinal gyrus
nTPM: 46.6
1794 Male, age 80, right hemisphere 50.7
1841 Female, age 85, right hemisphere 48.1
1847 Female, age 91, left hemisphere 47.5
2848 Male, age 76, right hemisphere 44.1
2521 Female, age 94, right hemisphere 42.5
Subiculum
nTPM: 46.5
2729 Female, age 91, right hemisphere 54.3
1977 Female, age 85, both hemispheres 48.1
1901 Male, age 80, both hemispheres 46.4
2042 Male, age 76, both hemispheres 45.4
2619 Male, age 74, both hemispheres 45.3
2438 Female, age 94, left hemisphere 39.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 52.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 52.8
Samples: 197

Max nTPM: 94.7
Min nTPM: 22.0
Std nTPM: 11.8
Median nTPM: 52.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 94.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 87.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 84.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 83.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 81.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 80.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 77.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 77.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 73.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 72.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 72.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 63.8
FF:10153-102I9 76 years, female 74.3
FF:10169-103B7 60 years, female 53.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 8.4
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.2
Sample A Female 9.8
Sample B Female 8.8
Sample C Male 7.2
Sample D Male 7.9
Entorhinal cortex
nTPM: 7.1
Samples: 4

Max nTPM: 7.7
Min nTPM: 6.5
Sample A Female 7.1
Sample B Female 7.0
Sample C Male 7.7
Sample D Male 6.5
Subiculum
nTPM: 7.4
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.7
Sample A Female 8.6
Sample B Female 6.8
Sample C Male 7.5
Sample D Male 6.7
Ventral hippocampus
nTPM: 8.3
Samples: 4

Max nTPM: 9.5
Min nTPM: 7.0
Sample A Female 7.7
Sample B Female 7.0
Sample C Male 9.1
Sample D Male 9.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 88.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 82.1
Samples: 4

Max nTPM: 91.9
Min nTPM: 73.8
Sample A Male 73.8
Sample B Male 80.7
Sample C Female 82.0
Sample D Female 91.9
Hippocampal formation
nTPM: 88.4
Samples: 4

Max nTPM: 94.2
Min nTPM: 82.1
Sample A Male 94.2
Sample B Male 88.2
Sample C Female 89.1
Sample D Female 82.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 15.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.5
74800953 Antisense, RP_060315_02_A10, Mouse strain C57BL/6J (56 days, male) 17.9
68193038 Antisense, RP_040825_01_H05, Mouse strain C57BL/6J (56 days, male) 13.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.