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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.1 nTPM
HPA:20.1 nTPM
GTEx:40.5 nTPM
FANTOM5:49.4 Scaled Tags Per Million
Pig:6.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.7
1830 Male, age 51, unknown 18.8
2828 Female, age 72, unknown 18.7
1833 Male, age 53, unknown 18.6
2411 Female, age 72, unknown 17.9
1827 Male, age 72, unknown 17.8
2019 Male, age 18, unknown 17.8
2219 Male, age 76, both hemispheres 17.7
1870 Female, age 42, unknown 17.2
2586 Male, age 75, left hemisphere 16.3
2666 Male, age 74, left hemisphere 16.1
Dorsal raphe nucleus
nTPM: 18.4
2750 Male, age 76, both hemispheres 19.1
2047 Male, age 72, unknown 18.7
1828 Male, age 53, unknown 18.2
2016 Female, age 72, unknown 18.1
2298 Female, age 72, unknown 17.7
Inferior colliculus
nTPM: 17.9
2849 Male, age 72, unknown 18.4
1890 Male, age 53, unknown 18.0
1848 Female, age 42, unknown 17.7
2097 Female, age 72, unknown 17.4
Median raphe nucleus
nTPM: 20.1
2220 Male, age 76, midline 20.1
Pedunculopontine tegmental nucleus
nTPM: 18.7
2338 Male, age 61, both hemispheres 19.1
1921 Female, age 85, both hemispheres 18.5
2334 Male, age 80, both hemispheres 18.4
Periaquaductal grey, anterior
nTPM: 18.0
1947 Male, age 18, unknown 19.1
1795 Male, age 51, unknown 17.6
2502 Female, age 75, unknown 17.2
Periaquaductal grey, dorsal
nTPM: 18.8
2850 Male, age 76, both hemispheres 19.4
1831 Male, age 72, unknown 19.3
2464 Female, age 72, unknown 18.7
1840 Male, age 53, unknown 17.8
Periaquaductal grey, lateral
nTPM: 18.6
2140 Male, age 76, both hemispheres 19.2
2272 Male, age 74, both hemispheres 18.7
2053 Male, age 18, unknown 18.0
Pretectal area
nTPM: 18.6
2273 Male, age 74, both hemispheres 20.0
2667 Female, age 75, unknown 19.6
1815 Male, age 53, unknown 19.0
2224 Female, age 72, unknown 18.9
1816 Male, age 51, unknown 18.8
1817 Female, age 42, unknown 18.4
1944 Female, age 72, unknown 18.4
2825 Male, age 18, unknown 18.4
2007 Male, age 72, unknown 17.9
2407 Male, age 75, both hemispheres 17.8
2316 Male, age 76, right hemisphere 17.6
Red nucleus
nTPM: 18.1
2823 Male, age 76, right hemisphere 18.9
1821 Female, age 72, unknown 18.6
1865 Male, age 51, unknown 18.5
1954 Female, age 42, unknown 18.5
2785 Male, age 18, unknown 18.4
2584 Male, age 75, left hemisphere 18.3
2588 Male, age 74, left hemisphere 18.2
1904 Male, age 53, unknown 17.9
2503 Female, age 72, unknown 17.9
2725 Female, age 75, unknown 17.7
2769 Male, age 72, unknown 17.5
2227 Male, age 72, unknown 17.2
Substantia nigra
nTPM: 18.4
2590 Female, age 75, unknown 19.3
2409 Female, age 72, unknown 19.1
1916 Female, age 42, unknown 19.0
2241 Male, age 72, unknown 19.0
1941 Male, age 53, unknown 18.5
1889 Female, age 72, unknown 18.4
2699 Male, age 18, unknown 18.4
1851 Male, age 51, unknown 17.8
2583 Male, age 75, right hemisphere 17.4
2665 Male, age 74, both hemispheres 16.9
Superior colliculus
nTPM: 17.9
2087 Female, age 72, unknown 18.6
1913 Female, age 42, unknown 18.5
1895 Male, age 76, right hemisphere 18.4
2664 Male, age 75, both hemispheres 18.3
1995 Male, age 72, unknown 18.0
1796 Male, age 53, unknown 17.9
2587 Male, age 74, left hemisphere 17.8
1839 Male, age 51, unknown 17.4
2668 Female, age 75, unknown 17.4
2261 Male, age 18, unknown 17.1
Ventral tegmental area
nTPM: 18.2
2223 Female, age 72, unknown 19.6
2218 Male, age 76, both hemispheres 18.6
1915 Female, age 42, unknown 17.9
1942 Male, age 51, unknown 17.9
2021 Male, age 53, unknown 17.9
2410 Female, age 72, unknown 17.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.5
Samples: 139

Max nTPM: 62.1
Min nTPM: 25.5
Std nTPM: 7.2
Median nTPM: 40.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 62.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 61.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 60.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 58.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 58.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 56.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 52.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 51.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 51.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 50.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.4
FF:10158-103A5 76 years, female 49.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.6
Pig sample Sample description nTPM
Midbrain
nTPM: 6.6
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.0
Sample A Female 7.5
Sample B Female 6.4
Sample C Male 6.3
Sample D Male 6.0
Periaqueductal gray
nTPM: 5.9
Samples: 3

Max nTPM: 6.3
Min nTPM: 5.5
Sample B Female 5.5
Sample C Male 6.0
Sample D Male 6.3
Substantia nigra
nTPM: 6.2
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.6
Sample A Female 6.9
Sample B Female 5.6
Sample C Male 6.3
Sample D Male 5.8
Superior colliculi
nTPM: 6.1
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.9
Sample A Female 5.7
Sample B Female 4.9
Sample C Male 7.1
Sample D Male 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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