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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.4 nTPM
HPA:46.4 nTPM
GTEx:47.7 nTPM
FANTOM5:38.1 Scaled Tags Per Million
Pig:38.8 nTPM
Mouse:53.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.0
2828 Female, age 72, unknown 43.0
1870 Female, age 42, unknown 42.4
1833 Male, age 53, unknown 40.8
2411 Female, age 72, unknown 40.4
2666 Male, age 74, left hemisphere 40.1
1830 Male, age 51, unknown 39.7
2019 Male, age 18, unknown 39.6
2219 Male, age 76, both hemispheres 39.2
1827 Male, age 72, unknown 38.8
2586 Male, age 75, left hemisphere 35.9
Dorsal raphe nucleus
nTPM: 45.3
2298 Female, age 72, unknown 48.2
2047 Male, age 72, unknown 45.4
2016 Female, age 72, unknown 44.8
1828 Male, age 53, unknown 44.7
2750 Male, age 76, both hemispheres 43.6
Inferior colliculus
nTPM: 42.9
1890 Male, age 53, unknown 43.1
1848 Female, age 42, unknown 42.9
2849 Male, age 72, unknown 42.9
2097 Female, age 72, unknown 42.6
Median raphe nucleus
nTPM: 46.4
2220 Male, age 76, midline 46.4
Pedunculopontine tegmental nucleus
nTPM: 43.5
2338 Male, age 61, both hemispheres 46.7
2334 Male, age 80, both hemispheres 44.1
1921 Female, age 85, both hemispheres 39.8
Periaquaductal grey, anterior
nTPM: 41.1
1947 Male, age 18, unknown 42.8
1795 Male, age 51, unknown 40.2
2502 Female, age 75, unknown 40.2
Periaquaductal grey, dorsal
nTPM: 44.1
2850 Male, age 76, both hemispheres 50.6
1831 Male, age 72, unknown 43.3
2464 Female, age 72, unknown 41.6
1840 Male, age 53, unknown 40.9
Periaquaductal grey, lateral
nTPM: 42.7
2140 Male, age 76, both hemispheres 44.2
2053 Male, age 18, unknown 43.4
2272 Male, age 74, both hemispheres 40.7
Pretectal area
nTPM: 42.1
2667 Female, age 75, unknown 47.3
2224 Female, age 72, unknown 45.3
1944 Female, age 72, unknown 43.8
2273 Male, age 74, both hemispheres 43.2
1816 Male, age 51, unknown 42.3
1817 Female, age 42, unknown 42.0
1815 Male, age 53, unknown 40.9
2316 Male, age 76, right hemisphere 40.7
2825 Male, age 18, unknown 40.0
2407 Male, age 75, both hemispheres 39.4
2007 Male, age 72, unknown 37.9
Red nucleus
nTPM: 41.2
1821 Female, age 72, unknown 45.7
1904 Male, age 53, unknown 44.4
1954 Female, age 42, unknown 44.3
2769 Male, age 72, unknown 42.7
1865 Male, age 51, unknown 42.1
2503 Female, age 72, unknown 41.7
2227 Male, age 72, unknown 41.0
2725 Female, age 75, unknown 41.0
2823 Male, age 76, right hemisphere 40.4
2588 Male, age 74, left hemisphere 38.1
2785 Male, age 18, unknown 37.3
2584 Male, age 75, left hemisphere 35.7
Substantia nigra
nTPM: 42.2
2699 Male, age 18, unknown 46.4
1889 Female, age 72, unknown 44.6
2665 Male, age 74, both hemispheres 43.7
1851 Male, age 51, unknown 42.5
2241 Male, age 72, unknown 42.4
1941 Male, age 53, unknown 42.0
2409 Female, age 72, unknown 41.7
1916 Female, age 42, unknown 41.3
2583 Male, age 75, right hemisphere 38.7
2590 Female, age 75, unknown 38.7
Superior colliculus
nTPM: 40.3
1995 Male, age 72, unknown 44.3
1913 Female, age 42, unknown 42.6
2587 Male, age 74, left hemisphere 42.2
1839 Male, age 51, unknown 41.1
1796 Male, age 53, unknown 40.5
2261 Male, age 18, unknown 40.2
2668 Female, age 75, unknown 39.9
2087 Female, age 72, unknown 39.7
1895 Male, age 76, right hemisphere 36.5
2664 Male, age 75, both hemispheres 36.1
Ventral tegmental area
nTPM: 43.1
2223 Female, age 72, unknown 44.6
2410 Female, age 72, unknown 43.7
1915 Female, age 42, unknown 43.6
2021 Male, age 53, unknown 43.0
2218 Male, age 76, both hemispheres 42.2
1942 Male, age 51, unknown 41.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.7
Samples: 139

Max nTPM: 89.7
Min nTPM: 34.3
Std nTPM: 8.0
Median nTPM: 45.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 89.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 69.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 67.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 64.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 63.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 63.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 62.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 62.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 62.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 61.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 60.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.1
FF:10158-103A5 76 years, female 38.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.8
Pig sample Sample description nTPM
Midbrain
nTPM: 34.0
Samples: 4

Max nTPM: 46.1
Min nTPM: 27.7
Sample A Female 46.1
Sample B Female 29.6
Sample C Male 32.5
Sample D Male 27.7
Periaqueductal gray
nTPM: 26.1
Samples: 3

Max nTPM: 27.3
Min nTPM: 25.5
Sample B Female 25.5
Sample C Male 25.6
Sample D Male 27.3
Substantia nigra
nTPM: 29.9
Samples: 4

Max nTPM: 35.5
Min nTPM: 24.3
Sample A Female 35.1
Sample B Female 35.5
Sample C Male 24.3
Sample D Male 24.8
Superior colliculi
nTPM: 38.8
Samples: 4

Max nTPM: 53.2
Min nTPM: 29.1
Sample A Female 38.0
Sample B Female 53.2
Sample C Male 34.8
Sample D Male 29.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.3
Samples: 4

Max nTPM: 55.2
Min nTPM: 52.3
Sample A Male 52.4
Sample B Male 55.2
Sample C Female 53.3
Sample D Female 52.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68269634 Antisense, RP_041129_01_H11, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.