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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:43.1 nTPM
HPA:43.1 nTPM
GTEx:40.7 nTPM
FANTOM5:37.2 Scaled Tags Per Million
Pig:23.7 nTPM
Mouse:54.6 nTPM
Allen mouse:0.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA034845
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.7
2481 Female, age 94, left hemisphere 43.1
1857 Female, age 85, left hemisphere 39.2
2290 Female, age 72, unknown 38.9
2288 Male, age 75, left hemisphere 38.5
2846 Female, age 79, unknown 38.0
1854 Male, age 80, left hemisphere 37.9
1781 Male, age 74, unknown 37.7
2289 Male, age 61, right hemisphere 36.3
Claustrum
nTPM: 31.9
2196 Female, age 79, unknown 35.8
2392 Female, age 94, both hemispheres 33.2
2292 Female, age 85, both hemispheres 32.7
1956 Male, age 74, unknown 32.6
2491 Male, age 75, both hemispheres 31.5
2645 Female, age 72, unknown 31.2
2198 Male, age 80, both hemispheres 30.9
2284 Female, age 91, both hemispheres 30.0
2568 Male, age 61, both hemispheres 29.6
Globus pallidus, externus
nTPM: 40.9
1996 Male, age 80, right hemisphere 46.7
2772 Female, age 79, unknown 43.9
2395 Male, age 75, both hemispheres 40.3
2646 Male, age 61, right hemisphere 39.2
2567 Female, age 72, unknown 34.4
Globus pallidus, internus
nTPM: 43.1
2037 Male, age 80, right hemisphere 45.8
2778 Female, age 91, both hemispheres 45.5
2483 Female, age 94, right hemisphere 45.1
1818 Male, age 74, unknown 43.9
2287 Male, age 75, right hemisphere 43.1
2111 Female, age 85, right hemisphere 40.1
2566 Female, age 72, unknown 38.0
Nucleus accumbens
nTPM: 38.1
2391 Female, age 94, left hemisphere 42.8
2698 Female, age 72, unknown 41.9
2286 Male, age 75, left hemisphere 38.5
2732 Male, age 80, right hemisphere 38.5
1806 Female, age 85, left hemisphere 38.3
1856 Female, age 91, right hemisphere 37.8
2824 Male, age 61, right hemisphere 34.4
1783 Male, age 74, unknown 32.8
Nucleus basalis of Meynert
nTPM: 38.0
2569 Male, age 61, both hemispheres 39.7
2393 Male, age 80, right hemisphere 38.0
2821 Male, age 75, both hemispheres 37.3
2484 Female, age 94, left hemisphere 37.0
Nucleus of the diagonal band
nTPM: 35.1
1979 Male, age 74, unknown 39.1
1812 Female, age 91, both hemispheres 37.6
2195 Female, age 85, both hemispheres 34.8
2775 Male, age 80, right hemisphere 33.1
2029 Male, age 61, right hemisphere 31.0
Olfactory tubercle
nTPM: 34.9
1846 Male, age 80, right hemisphere 37.0
2856 Male, age 75, right hemisphere 35.7
2487 Female, age 94, left hemisphere 34.6
1998 Female, age 91, both hemispheres 32.2
Putamen
nTPM: 36.2
2482 Female, age 94, left hemisphere 41.1
1937 Female, age 91, right hemisphere 38.5
1838 Male, age 80, right hemisphere 36.5
1829 Male, age 74, unknown 35.9
2466 Female, age 79, unknown 35.0
2489 Female, age 72, unknown 34.5
2647 Male, age 75, left hemisphere 32.3
Septal nuclei
nTPM: 36.9
2199 Male, age 80, right hemisphere 41.3
2394 Male, age 61, left hemisphere 40.6
2009 Female, age 91, both hemispheres 36.0
2031 Female, age 72, unknown 35.9
2629 Female, age 94, right hemisphere 35.5
2059 Female, age 85, both hemispheres 34.8
1960 Male, age 74, unknown 34.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.6
Samples: 246

Max nTPM: 72.9
Min nTPM: 27.7
Std nTPM: 7.2
Median nTPM: 39.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 72.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 71.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 64.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 62.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 61.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 61.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 59.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 58.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 57.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 56.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 55.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.7
Samples: 246

Max nTPM: 78.0
Min nTPM: 26.2
Std nTPM: 8.4
Median nTPM: 39.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 78.0
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 75.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 69.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 69.0
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 65.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 63.3
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 61.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 60.3
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 59.4
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 58.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 58.5
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Brain - Putamen (basal ganglia)
Average nTPM: 39.7
Samples: 205

Max nTPM: 63.5
Min nTPM: 25.5
Std nTPM: 6.3
Median nTPM: 38.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 63.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 60.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 56.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 56.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 54.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 54.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 53.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 52.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 52.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 52.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 50.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 36.8
FF:10164-103B2 76 years, female 36.8
Globus pallidus
Scaled Tags Per Million: 37.2
FF:10175-103C4 60 years, female 40.2
FF:10161-103A8 76 years, female 34.1
Nucleus accumbens
Scaled Tags Per Million: 25.3
FF:10037-101F1 23-56 years, mixed 25.3
Putamen
Scaled Tags Per Million: 32.4
FF:10176-103C5 60 years, female 32.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.7
Pig sample Sample description nTPM
Caudate
nTPM: 18.5
Samples: 4

Max nTPM: 20.7
Min nTPM: 17.0
Sample A Female 20.7
Sample B Female 17.2
Sample C Male 19.1
Sample D Male 17.0
Putamen
nTPM: 22.9
Samples: 4

Max nTPM: 31.8
Min nTPM: 17.8
Sample A Female 23.5
Sample B Female 17.8
Sample C Male 31.8
Sample D Male 18.6
Septum
nTPM: 23.7
Samples: 4

Max nTPM: 28.9
Min nTPM: 21.6
Sample A Female 22.1
Sample B Female 21.6
Sample C Male 28.9
Sample D Male 22.1
Ventral pallidum
nTPM: 21.1
Samples: 4

Max nTPM: 26.3
Min nTPM: 16.2
Sample A Female 16.2
Sample B Female 26.3
Sample C Male 24.1
Sample D Male 17.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 54.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 54.6
Samples: 4

Max nTPM: 58.4
Min nTPM: 49.2
Sample A Male 56.2
Sample B Male 49.2
Sample C Female 58.4
Sample D Female 54.6
Septum
nTPM: 54.0
Samples: 4

Max nTPM: 62.6
Min nTPM: 45.3
Sample A Male 45.3
Sample B Male 62.6
Sample C Female 55.1
Sample D Female 53.1
Ventral forebrain
nTPM: 53.2
Samples: 4

Max nTPM: 55.7
Min nTPM: 49.5
Sample A Male 55.7
Sample B Male 49.5
Sample C Female 53.1
Sample D Female 54.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
68269634 Antisense, RP_041129_01_H11, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.8
68269634 Antisense, RP_041129_01_H11, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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