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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.4 nTPM
HPA:34.4 nTPM
GTEx:45.6 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:63.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.8
1830 Male, age 51, unknown 34.7
1833 Male, age 53, unknown 33.4
2019 Male, age 18, unknown 33.0
2219 Male, age 76, both hemispheres 32.9
2411 Female, age 72, unknown 32.9
1870 Female, age 42, unknown 32.7
2828 Female, age 72, unknown 31.6
2666 Male, age 74, left hemisphere 31.0
1827 Male, age 72, unknown 29.5
2586 Male, age 75, left hemisphere 26.5
Dorsal raphe nucleus
nTPM: 30.2
2750 Male, age 76, both hemispheres 34.2
1828 Male, age 53, unknown 30.4
2016 Female, age 72, unknown 30.3
2047 Male, age 72, unknown 29.2
2298 Female, age 72, unknown 27.1
Inferior colliculus
nTPM: 29.8
2849 Male, age 72, unknown 31.2
1890 Male, age 53, unknown 30.9
1848 Female, age 42, unknown 28.9
2097 Female, age 72, unknown 28.3
Median raphe nucleus
nTPM: 29.7
2220 Male, age 76, midline 29.7
Pedunculopontine tegmental nucleus
nTPM: 32.3
2338 Male, age 61, both hemispheres 34.1
2334 Male, age 80, both hemispheres 31.7
1921 Female, age 85, both hemispheres 30.9
Periaquaductal grey, anterior
nTPM: 28.1
1795 Male, age 51, unknown 28.6
1947 Male, age 18, unknown 28.1
2502 Female, age 75, unknown 27.6
Periaquaductal grey, dorsal
nTPM: 29.6
2464 Female, age 72, unknown 32.3
2850 Male, age 76, both hemispheres 30.4
1831 Male, age 72, unknown 28.8
1840 Male, age 53, unknown 26.9
Periaquaductal grey, lateral
nTPM: 30.3
2272 Male, age 74, both hemispheres 31.0
2053 Male, age 18, unknown 30.1
2140 Male, age 76, both hemispheres 30.0
Pretectal area
nTPM: 30.1
2316 Male, age 76, right hemisphere 34.4
2667 Female, age 75, unknown 32.5
2407 Male, age 75, both hemispheres 32.3
2825 Male, age 18, unknown 31.4
2273 Male, age 74, both hemispheres 30.5
1815 Male, age 53, unknown 29.6
1817 Female, age 42, unknown 28.3
2224 Female, age 72, unknown 28.3
1944 Female, age 72, unknown 28.1
2007 Male, age 72, unknown 28.0
1816 Male, age 51, unknown 27.7
Red nucleus
nTPM: 34.4
2823 Male, age 76, right hemisphere 39.1
1865 Male, age 51, unknown 36.6
2227 Male, age 72, unknown 34.9
1954 Female, age 42, unknown 34.8
2769 Male, age 72, unknown 34.8
2503 Female, age 72, unknown 33.9
1821 Female, age 72, unknown 33.8
1904 Male, age 53, unknown 33.8
2725 Female, age 75, unknown 33.5
2584 Male, age 75, left hemisphere 32.6
2785 Male, age 18, unknown 32.5
2588 Male, age 74, left hemisphere 32.3
Substantia nigra
nTPM: 30.0
2699 Male, age 18, unknown 31.9
2241 Male, age 72, unknown 31.5
2665 Male, age 74, both hemispheres 31.1
2409 Female, age 72, unknown 30.4
1941 Male, age 53, unknown 30.3
1889 Female, age 72, unknown 29.7
2590 Female, age 75, unknown 29.5
1851 Male, age 51, unknown 29.1
2583 Male, age 75, right hemisphere 28.4
1916 Female, age 42, unknown 27.8
Superior colliculus
nTPM: 30.7
1895 Male, age 76, right hemisphere 34.0
1913 Female, age 42, unknown 34.0
1995 Male, age 72, unknown 32.8
2587 Male, age 74, left hemisphere 31.4
1839 Male, age 51, unknown 30.2
2668 Female, age 75, unknown 29.8
1796 Male, age 53, unknown 29.5
2087 Female, age 72, unknown 28.9
2664 Male, age 75, both hemispheres 28.4
2261 Male, age 18, unknown 28.0
Ventral tegmental area
nTPM: 30.4
2021 Male, age 53, unknown 32.0
2223 Female, age 72, unknown 31.3
1915 Female, age 42, unknown 30.4
2218 Male, age 76, both hemispheres 30.4
1942 Male, age 51, unknown 29.3
2410 Female, age 72, unknown 29.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.6
Samples: 139

Max nTPM: 152.2
Min nTPM: 15.4
Std nTPM: 17.5
Median nTPM: 41.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 152.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 124.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 86.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 82.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 80.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 77.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 75.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 74.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 69.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 69.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 67.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.5
FF:10158-103A5 76 years, female 24.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.0
Samples: 4

Max nTPM: 68.3
Min nTPM: 57.1
Sample A Male 59.7
Sample B Male 57.1
Sample C Female 68.3
Sample D Female 66.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
1959 Antisense, RP_040604_01_F02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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