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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.2 nTPM
HPA:25.2 nTPM
GTEx:86.4 nTPM
FANTOM5:232.8 Scaled Tags Per Million
Pig:59.9 nTPM
Mouse:151.4 nTPM
Allen mouse:13.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
2411 Female, age 72, unknown 25.6
1833 Male, age 53, unknown 24.4
2019 Male, age 18, unknown 24.4
1827 Male, age 72, unknown 23.6
1830 Male, age 51, unknown 23.3
2586 Male, age 75, left hemisphere 22.4
2666 Male, age 74, left hemisphere 22.4
2828 Female, age 72, unknown 22.3
2219 Male, age 76, both hemispheres 22.1
1870 Female, age 42, unknown 21.7
Dorsal raphe nucleus
nTPM: 24.5
2298 Female, age 72, unknown 26.0
2750 Male, age 76, both hemispheres 25.4
2016 Female, age 72, unknown 24.9
1828 Male, age 53, unknown 23.3
2047 Male, age 72, unknown 22.6
Inferior colliculus
nTPM: 23.4
1848 Female, age 42, unknown 23.9
2097 Female, age 72, unknown 23.6
1890 Male, age 53, unknown 23.0
2849 Male, age 72, unknown 22.9
Median raphe nucleus
nTPM: 22.5
2220 Male, age 76, midline 22.5
Pedunculopontine tegmental nucleus
nTPM: 22.8
1921 Female, age 85, both hemispheres 23.6
2338 Male, age 61, both hemispheres 22.7
2334 Male, age 80, both hemispheres 22.0
Periaquaductal grey, anterior
nTPM: 25.2
1795 Male, age 51, unknown 27.4
2502 Female, age 75, unknown 24.5
1947 Male, age 18, unknown 23.5
Periaquaductal grey, dorsal
nTPM: 22.2
1840 Male, age 53, unknown 22.8
2464 Female, age 72, unknown 22.6
1831 Male, age 72, unknown 22.1
2850 Male, age 76, both hemispheres 21.2
Periaquaductal grey, lateral
nTPM: 24.1
2053 Male, age 18, unknown 25.1
2272 Male, age 74, both hemispheres 24.5
2140 Male, age 76, both hemispheres 22.8
Pretectal area
nTPM: 24.1
2273 Male, age 74, both hemispheres 27.2
2316 Male, age 76, right hemisphere 25.0
1816 Male, age 51, unknown 24.7
2407 Male, age 75, both hemispheres 24.6
2224 Female, age 72, unknown 24.5
1817 Female, age 42, unknown 23.9
1944 Female, age 72, unknown 23.8
2667 Female, age 75, unknown 23.4
1815 Male, age 53, unknown 23.0
2007 Male, age 72, unknown 22.9
2825 Male, age 18, unknown 22.6
Red nucleus
nTPM: 22.6
2725 Female, age 75, unknown 24.6
1904 Male, age 53, unknown 24.1
2785 Male, age 18, unknown 23.1
2227 Male, age 72, unknown 22.4
2503 Female, age 72, unknown 22.4
2584 Male, age 75, left hemisphere 22.4
2588 Male, age 74, left hemisphere 22.3
2769 Male, age 72, unknown 22.3
1865 Male, age 51, unknown 22.2
1954 Female, age 42, unknown 22.2
2823 Male, age 76, right hemisphere 21.7
1821 Female, age 72, unknown 21.5
Substantia nigra
nTPM: 23.8
2241 Male, age 72, unknown 29.0
1889 Female, age 72, unknown 24.6
2409 Female, age 72, unknown 24.4
1941 Male, age 53, unknown 23.5
2583 Male, age 75, right hemisphere 23.3
2590 Female, age 75, unknown 23.2
1916 Female, age 42, unknown 23.1
2665 Male, age 74, both hemispheres 22.4
2699 Male, age 18, unknown 22.3
1851 Male, age 51, unknown 21.9
Superior colliculus
nTPM: 23.2
2087 Female, age 72, unknown 25.8
2261 Male, age 18, unknown 24.3
1839 Male, age 51, unknown 23.3
2587 Male, age 74, left hemisphere 22.9
1796 Male, age 53, unknown 22.7
1895 Male, age 76, right hemisphere 22.7
1995 Male, age 72, unknown 22.7
1913 Female, age 42, unknown 22.4
2664 Male, age 75, both hemispheres 22.4
2668 Female, age 75, unknown 22.4
Ventral tegmental area
nTPM: 23.2
2410 Female, age 72, unknown 27.3
1915 Female, age 42, unknown 22.9
1942 Male, age 51, unknown 22.7
2218 Male, age 76, both hemispheres 22.3
2223 Female, age 72, unknown 22.2
2021 Male, age 53, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 86.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.4
Samples: 139

Max nTPM: 223.9
Min nTPM: 51.8
Std nTPM: 25.1
Median nTPM: 80.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 223.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 193.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 147.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 139.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 135.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 135.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 126.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 125.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 122.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 120.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 118.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 232.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 232.8
FF:10158-103A5 76 years, female 232.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.9
Pig sample Sample description nTPM
Midbrain
nTPM: 56.5
Samples: 4

Max nTPM: 78.1
Min nTPM: 38.0
Sample A Female 38.0
Sample B Female 45.7
Sample C Male 78.1
Sample D Male 64.0
Periaqueductal gray
nTPM: 49.2
Samples: 3

Max nTPM: 58.6
Min nTPM: 43.9
Sample B Female 45.1
Sample C Male 58.6
Sample D Male 43.9
Substantia nigra
nTPM: 46.6
Samples: 4

Max nTPM: 61.6
Min nTPM: 25.5
Sample A Female 61.3
Sample B Female 38.0
Sample C Male 61.6
Sample D Male 25.5
Superior colliculi
nTPM: 60.0
Samples: 4

Max nTPM: 71.3
Min nTPM: 48.0
Sample A Female 62.3
Sample B Female 48.0
Sample C Male 71.3
Sample D Male 58.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 151.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 151.4
Samples: 4

Max nTPM: 155.8
Min nTPM: 147.0
Sample A Male 147.0
Sample B Male 152.1
Sample C Female 155.8
Sample D Female 150.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.7
69014542 Antisense, RP_050310_01_C10, Mouse strain C57BL/6J (56 days, male) 13.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.