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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
RNA expressioni
Consensus:65.1 nTPM
HPA:65.1 nTPM
GTEx:49.7 nTPM
FANTOM5:214.4 Scaled Tags Per Million
Pig:62.3 nTPM
Mouse:43.0 nTPM

CAUDATE - Antibody stainingi
Antibody HPA001788
Glial cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 65.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 63.1
1857 Female, age 85, left hemisphere 66.4
2846 Female, age 79, unknown 65.8
2290 Female, age 72, unknown 65.7
2288 Male, age 75, left hemisphere 65.4
2481 Female, age 94, left hemisphere 61.2
1854 Male, age 80, left hemisphere 60.9
2289 Male, age 61, right hemisphere 59.9
1781 Male, age 74, unknown 59.5
Claustrum
nTPM: 57.4
2392 Female, age 94, both hemispheres 67.1
1956 Male, age 74, unknown 60.4
2196 Female, age 79, unknown 58.1
2292 Female, age 85, both hemispheres 56.9
2491 Male, age 75, both hemispheres 56.6
2198 Male, age 80, both hemispheres 56.3
2284 Female, age 91, both hemispheres 55.4
2568 Male, age 61, both hemispheres 54.4
2645 Female, age 72, unknown 51.8
Globus pallidus, externus
nTPM: 59.8
1996 Male, age 80, right hemisphere 64.6
2395 Male, age 75, both hemispheres 63.5
2772 Female, age 79, unknown 59.0
2646 Male, age 61, right hemisphere 56.6
2567 Female, age 72, unknown 55.1
Globus pallidus, internus
nTPM: 65.1
2287 Male, age 75, right hemisphere 71.0
2778 Female, age 91, both hemispheres 67.4
2111 Female, age 85, right hemisphere 66.1
2037 Male, age 80, right hemisphere 65.1
1818 Male, age 74, unknown 64.6
2483 Female, age 94, right hemisphere 62.5
2566 Female, age 72, unknown 59.4
Nucleus accumbens
nTPM: 64.5
2391 Female, age 94, left hemisphere 77.5
2698 Female, age 72, unknown 67.5
2286 Male, age 75, left hemisphere 65.2
1806 Female, age 85, left hemisphere 65.0
1856 Female, age 91, right hemisphere 62.4
1783 Male, age 74, unknown 62.0
2732 Male, age 80, right hemisphere 60.5
2824 Male, age 61, right hemisphere 56.2
Nucleus basalis of Meynert
nTPM: 58.9
2393 Male, age 80, right hemisphere 62.0
2484 Female, age 94, left hemisphere 59.9
2821 Male, age 75, both hemispheres 58.6
2569 Male, age 61, both hemispheres 54.9
Nucleus of the diagonal band
nTPM: 59.6
2195 Female, age 85, both hemispheres 62.7
1812 Female, age 91, both hemispheres 62.4
1979 Male, age 74, unknown 59.5
2775 Male, age 80, right hemisphere 58.3
2029 Male, age 61, right hemisphere 55.0
Olfactory tubercle
nTPM: 57.7
1846 Male, age 80, right hemisphere 60.8
2856 Male, age 75, right hemisphere 59.9
1998 Female, age 91, both hemispheres 55.4
2487 Female, age 94, left hemisphere 54.7
Putamen
nTPM: 60.8
2482 Female, age 94, left hemisphere 65.3
1829 Male, age 74, unknown 64.3
1937 Female, age 91, right hemisphere 61.5
2466 Female, age 79, unknown 60.7
1838 Male, age 80, right hemisphere 59.7
2647 Male, age 75, left hemisphere 57.4
2489 Female, age 72, unknown 56.9
Septal nuclei
nTPM: 59.3
2031 Female, age 72, unknown 61.5
2629 Female, age 94, right hemisphere 61.5
2199 Male, age 80, right hemisphere 60.5
2394 Male, age 61, left hemisphere 60.1
2009 Female, age 91, both hemispheres 59.7
1960 Male, age 74, unknown 57.0
2059 Female, age 85, both hemispheres 54.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 49.7
Samples: 246

Max nTPM: 123.0
Min nTPM: 36.2
Std nTPM: 9.8
Median nTPM: 47.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 123.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 91.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 86.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 79.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 78.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 75.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 72.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 71.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 71.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 70.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 69.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 48.1
Samples: 246

Max nTPM: 104.6
Min nTPM: 35.0
Std nTPM: 8.6
Median nTPM: 45.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 104.6
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 85.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 83.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 76.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 74.1
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 70.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 69.7
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 67.4
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 67.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 66.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 66.6
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Brain - Putamen (basal ganglia)
Average nTPM: 47.5
Samples: 205

Max nTPM: 92.7
Min nTPM: 31.8
Std nTPM: 8.3
Median nTPM: 45.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 92.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 78.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 78.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 77.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 73.2
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 69.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 69.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 66.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 64.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 64.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 60.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 214.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 214.4
FF:10164-103B2 76 years, female 214.4
Globus pallidus
Scaled Tags Per Million: 183.5
FF:10161-103A8 76 years, female 238.5
FF:10175-103C4 60 years, female 128.6
Nucleus accumbens
Scaled Tags Per Million: 116.9
FF:10037-101F1 23-56 years, mixed 116.9
Putamen
Scaled Tags Per Million: 196.2
FF:10176-103C5 60 years, female 196.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 62.3
Pig sample Sample description nTPM
Caudate
nTPM: 54.3
Samples: 4

Max nTPM: 57.3
Min nTPM: 50.4
Sample A Female 57.3
Sample B Female 50.4
Sample C Male 53.9
Sample D Male 55.5
Putamen
nTPM: 62.3
Samples: 4

Max nTPM: 71.1
Min nTPM: 51.3
Sample A Female 65.7
Sample B Female 51.3
Sample C Male 71.1
Sample D Male 61.0
Septum
nTPM: 60.3
Samples: 4

Max nTPM: 65.3
Min nTPM: 55.1
Sample A Female 59.9
Sample B Female 55.1
Sample C Male 65.3
Sample D Male 60.7
Ventral pallidum
nTPM: 55.3
Samples: 4

Max nTPM: 57.1
Min nTPM: 53.8
Sample A Female 53.8
Sample B Female 56.4
Sample C Male 53.8
Sample D Male 57.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 43.0
Samples: 4

Max nTPM: 47.5
Min nTPM: 39.0
Sample A Male 47.5
Sample B Male 41.4
Sample C Female 44.0
Sample D Female 39.0
Septum
nTPM: 37.4
Samples: 4

Max nTPM: 41.1
Min nTPM: 32.6
Sample A Male 32.6
Sample B Male 39.7
Sample C Female 36.0
Sample D Female 41.1
Ventral forebrain
nTPM: 36.6
Samples: 4

Max nTPM: 39.8
Min nTPM: 33.9
Sample A Male 39.8
Sample B Male 33.9
Sample C Female 36.8
Sample D Female 35.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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