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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.7 nTPM
HPA:61.7 nTPM
GTEx:50.1 nTPM
FANTOM5:210.4 Scaled Tags Per Million
Pig:63.6 nTPM
Mouse:44.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.6
2411 Female, age 72, unknown 62.9
1830 Male, age 51, unknown 62.2
1833 Male, age 53, unknown 60.9
2219 Male, age 76, both hemispheres 60.5
1870 Female, age 42, unknown 59.8
2019 Male, age 18, unknown 59.8
1827 Male, age 72, unknown 57.4
2828 Female, age 72, unknown 57.3
2666 Male, age 74, left hemisphere 56.3
2586 Male, age 75, left hemisphere 48.8
Dorsal raphe nucleus
nTPM: 59.4
2750 Male, age 76, both hemispheres 63.0
2016 Female, age 72, unknown 59.8
1828 Male, age 53, unknown 59.7
2298 Female, age 72, unknown 57.3
2047 Male, age 72, unknown 57.2
Inferior colliculus
nTPM: 59.2
1890 Male, age 53, unknown 60.7
1848 Female, age 42, unknown 59.6
2097 Female, age 72, unknown 58.9
2849 Male, age 72, unknown 57.7
Median raphe nucleus
nTPM: 61.0
2220 Male, age 76, midline 61.0
Pedunculopontine tegmental nucleus
nTPM: 59.3
2334 Male, age 80, both hemispheres 61.7
1921 Female, age 85, both hemispheres 59.9
2338 Male, age 61, both hemispheres 56.4
Periaquaductal grey, anterior
nTPM: 57.0
2502 Female, age 75, unknown 59.7
1947 Male, age 18, unknown 58.5
1795 Male, age 51, unknown 52.8
Periaquaductal grey, dorsal
nTPM: 61.7
1831 Male, age 72, unknown 63.9
2850 Male, age 76, both hemispheres 62.2
2464 Female, age 72, unknown 60.9
1840 Male, age 53, unknown 59.7
Periaquaductal grey, lateral
nTPM: 59.9
2140 Male, age 76, both hemispheres 60.8
2272 Male, age 74, both hemispheres 60.4
2053 Male, age 18, unknown 58.5
Pretectal area
nTPM: 60.9
1944 Female, age 72, unknown 64.1
2273 Male, age 74, both hemispheres 63.2
1815 Male, age 53, unknown 62.9
1816 Male, age 51, unknown 61.4
2667 Female, age 75, unknown 60.5
2224 Female, age 72, unknown 60.4
2316 Male, age 76, right hemisphere 60.3
2007 Male, age 72, unknown 60.2
1817 Female, age 42, unknown 60.0
2825 Male, age 18, unknown 58.6
2407 Male, age 75, both hemispheres 58.3
Red nucleus
nTPM: 59.9
2823 Male, age 76, right hemisphere 64.4
2503 Female, age 72, unknown 63.0
1821 Female, age 72, unknown 62.7
1904 Male, age 53, unknown 61.9
1954 Female, age 42, unknown 61.9
2725 Female, age 75, unknown 60.8
1865 Male, age 51, unknown 60.6
2785 Male, age 18, unknown 59.0
2227 Male, age 72, unknown 58.7
2769 Male, age 72, unknown 56.4
2588 Male, age 74, left hemisphere 55.1
2584 Male, age 75, left hemisphere 53.9
Substantia nigra
nTPM: 60.8
2241 Male, age 72, unknown 68.0
2699 Male, age 18, unknown 63.7
1889 Female, age 72, unknown 63.5
1851 Male, age 51, unknown 62.5
1916 Female, age 42, unknown 61.7
1941 Male, age 53, unknown 60.6
2665 Male, age 74, both hemispheres 59.1
2409 Female, age 72, unknown 57.9
2583 Male, age 75, right hemisphere 56.3
2590 Female, age 75, unknown 55.0
Superior colliculus
nTPM: 60.1
1895 Male, age 76, right hemisphere 64.2
1913 Female, age 42, unknown 63.4
2668 Female, age 75, unknown 62.3
2087 Female, age 72, unknown 62.2
2587 Male, age 74, left hemisphere 61.8
1995 Male, age 72, unknown 61.3
2261 Male, age 18, unknown 58.4
1839 Male, age 51, unknown 58.2
1796 Male, age 53, unknown 56.7
2664 Male, age 75, both hemispheres 53.0
Ventral tegmental area
nTPM: 60.0
2410 Female, age 72, unknown 62.9
2223 Female, age 72, unknown 61.0
2218 Male, age 76, both hemispheres 60.8
1942 Male, age 51, unknown 59.6
1915 Female, age 42, unknown 58.9
2021 Male, age 53, unknown 57.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.1
Samples: 139

Max nTPM: 115.5
Min nTPM: 33.8
Std nTPM: 11.5
Median nTPM: 47.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 115.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 99.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 91.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 82.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 78.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 77.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 69.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 68.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 67.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 66.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 66.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 210.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 210.4
FF:10158-103A5 76 years, female 210.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.6
Pig sample Sample description nTPM
Midbrain
nTPM: 63.7
Samples: 4

Max nTPM: 68.9
Min nTPM: 57.8
Sample A Female 68.9
Sample B Female 67.3
Sample C Male 60.6
Sample D Male 57.8
Periaqueductal gray
nTPM: 61.9
Samples: 3

Max nTPM: 64.8
Min nTPM: 59.7
Sample B Female 59.7
Sample C Male 61.2
Sample D Male 64.8
Substantia nigra
nTPM: 60.5
Samples: 4

Max nTPM: 68.6
Min nTPM: 56.4
Sample A Female 68.6
Sample B Female 56.4
Sample C Male 58.8
Sample D Male 58.1
Superior colliculi
nTPM: 59.3
Samples: 4

Max nTPM: 63.3
Min nTPM: 54.0
Sample A Female 60.6
Sample B Female 54.0
Sample C Male 59.1
Sample D Male 63.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.1
Samples: 4

Max nTPM: 48.9
Min nTPM: 38.7
Sample A Male 38.7
Sample B Male 42.4
Sample C Female 48.9
Sample D Female 46.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.