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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:110.1 nTPM
HPA:110.1 nTPM
GTEx:95.5 nTPM
FANTOM5:219.3 Scaled Tags Per Million
Pig:39.7 nTPM
Mouse:125.7 nTPM
Allen mouse:9.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA027183Antibody HPA028105
Glial cells LowNot detected
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 110.1
Sample id Sample description nTPM
Hippocampus
nTPM: 107.0
2529 Female, age 94, left hemisphere 117.7
2621 Female, age 67, right hemisphere 107.8
1898 Male, age 80, left hemisphere 105.3
1855 Male, age 76, left hemisphere 104.9
2148 Female, age 91, left hemisphere 104.1
1911 Female, age 85, right hemisphere 102.3
Dentate gyrus
nTPM: 107.0
2530 Female, age 94, left hemisphere 111.8
2531 Female, age 67, both hemispheres 111.1
2010 Male, age 76, both hemispheres 108.8
2246 Female, age 85, both hemispheres 107.6
1927 Female, age 91, both hemispheres 101.4
2528 Male, age 74, both hemispheres 101.3
Entorhinal gyrus
nTPM: 106.6
2764 Male, age 80, right hemisphere 110.1
1938 Female, age 85, left hemisphere 108.4
2686 Male, age 75, right hemisphere 108.1
1787 Male, age 76, left hemisphere 105.7
2117 Female, age 91, right hemisphere 105.0
2613 Female, age 94, left hemisphere 102.5
Hippocampus, CA1
nTPM: 107.7
2045 Male, age 76, both hemispheres 120.9
2527 Male, age 74, both hemispheres 105.8
2749 Male, age 80, left hemisphere 104.3
2082 Female, age 91, right hemisphere 103.7
1873 Female, age 85, both hemispheres 103.6
Hippocampus, CA2
nTPM: 105.7
1892 Male, age 76, both hemispheres 110.7
1940 Female, age 85, left hemisphere 109.5
2437 Female, age 94, left hemisphere 107.4
2113 Female, age 91, right hemisphere 103.5
2249 Male, age 74, both hemispheres 102.9
1963 Male, age 80, left hemisphere 100.3
Hippocampus, CA3
nTPM: 107.5
1867 Male, age 76, both hemispheres 111.3
2620 Female, age 94, left hemisphere 110.0
2861 Female, age 67, both hemispheres 108.5
2137 Male, age 80, left hemisphere 105.4
1891 Female, age 85, both hemispheres 105.2
2436 Male, age 74, both hemispheres 104.5
Parahippocampal cortex
nTPM: 108.3
2245 Female, age 91, both hemispheres 114.4
1850 Male, age 80, both hemispheres 113.5
2532 Female, age 72, left hemisphere 113.5
2018 Male, age 76, both hemispheres 109.4
2622 Female, age 67, right hemisphere 107.9
1933 Female, age 85, both hemispheres 106.9
2692 Male, age 74, both hemispheres 106.8
1990 Female, age 91, right hemisphere 105.7
2250 Female, age 67, right hemisphere 103.1
2693 Female, age 94, both hemispheres 101.5
Perirhinal gyrus
nTPM: 110.1
2848 Male, age 76, right hemisphere 112.9
1794 Male, age 80, right hemisphere 112.7
1841 Female, age 85, right hemisphere 112.7
1847 Female, age 91, left hemisphere 107.7
2521 Female, age 94, right hemisphere 104.8
Subiculum
nTPM: 107.0
2438 Female, age 94, left hemisphere 111.6
2042 Male, age 76, both hemispheres 109.5
1901 Male, age 80, both hemispheres 108.9
1977 Female, age 85, both hemispheres 107.7
2619 Male, age 74, both hemispheres 104.2
2729 Female, age 91, right hemisphere 100.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 95.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 95.5
Samples: 197

Max nTPM: 202.9
Min nTPM: 52.9
Std nTPM: 24.1
Median nTPM: 90.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 202.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 186.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 186.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 179.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 173.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 157.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 154.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 150.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 147.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 146.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 137.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 219.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 219.3
FF:10169-103B7 60 years, female 224.9
FF:10153-102I9 76 years, female 213.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 39.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 39.7
Samples: 4

Max nTPM: 48.4
Min nTPM: 31.3
Sample A Female 48.4
Sample B Female 34.9
Sample C Male 44.1
Sample D Male 31.3
Entorhinal cortex
nTPM: 36.1
Samples: 4

Max nTPM: 42.3
Min nTPM: 33.4
Sample A Female 34.0
Sample B Female 42.3
Sample C Male 34.5
Sample D Male 33.4
Subiculum
nTPM: 34.2
Samples: 4

Max nTPM: 46.9
Min nTPM: 27.0
Sample A Female 46.9
Sample B Female 31.1
Sample C Male 31.8
Sample D Male 27.0
Ventral hippocampus
nTPM: 35.9
Samples: 4

Max nTPM: 42.5
Min nTPM: 27.4
Sample A Female 33.3
Sample B Female 27.4
Sample C Male 42.5
Sample D Male 40.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 125.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 125.7
Samples: 4

Max nTPM: 128.2
Min nTPM: 122.3
Sample A Male 127.1
Sample B Male 125.0
Sample C Female 122.3
Sample D Female 128.2
Hippocampal formation
nTPM: 125.4
Samples: 4

Max nTPM: 135.4
Min nTPM: 114.6
Sample A Male 114.6
Sample B Male 124.1
Sample C Female 135.4
Sample D Female 127.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.7
68302329 Antisense, RP_041130_02_F06, Mouse strain C57BL/6J (56 days, male) 10.6
2442 Antisense, RP_Baylor_253947, Mouse strain C57BL/6J (56 days, male) 8.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.