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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:110.5 nTPM
HPA:110.5 nTPM
GTEx:97.0 nTPM
FANTOM5:202.6 Scaled Tags Per Million
Pig:43.8 nTPM
Mouse:134.3 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 110.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.7
2666 Male, age 74, left hemisphere 111.9
2219 Male, age 76, both hemispheres 111.4
1870 Female, age 42, unknown 108.9
1827 Male, age 72, unknown 107.6
2586 Male, age 75, left hemisphere 107.0
1833 Male, age 53, unknown 105.7
1830 Male, age 51, unknown 104.7
2411 Female, age 72, unknown 104.6
2019 Male, age 18, unknown 104.5
2828 Female, age 72, unknown 101.1
Dorsal raphe nucleus
nTPM: 104.4
1828 Male, age 53, unknown 106.2
2047 Male, age 72, unknown 105.5
2298 Female, age 72, unknown 104.8
2016 Female, age 72, unknown 103.6
2750 Male, age 76, both hemispheres 101.9
Inferior colliculus
nTPM: 106.8
2849 Male, age 72, unknown 114.3
1890 Male, age 53, unknown 106.8
1848 Female, age 42, unknown 105.4
2097 Female, age 72, unknown 100.6
Median raphe nucleus
nTPM: 110.5
2220 Male, age 76, midline 110.5
Pedunculopontine tegmental nucleus
nTPM: 109.2
2338 Male, age 61, both hemispheres 112.2
2334 Male, age 80, both hemispheres 110.4
1921 Female, age 85, both hemispheres 105.1
Periaquaductal grey, anterior
nTPM: 104.9
1947 Male, age 18, unknown 106.2
1795 Male, age 51, unknown 105.6
2502 Female, age 75, unknown 102.9
Periaquaductal grey, dorsal
nTPM: 107.8
2850 Male, age 76, both hemispheres 115.8
1840 Male, age 53, unknown 108.1
2464 Female, age 72, unknown 104.4
1831 Male, age 72, unknown 102.7
Periaquaductal grey, lateral
nTPM: 106.2
2140 Male, age 76, both hemispheres 108.6
2272 Male, age 74, both hemispheres 107.1
2053 Male, age 18, unknown 102.8
Pretectal area
nTPM: 106.1
1817 Female, age 42, unknown 109.4
2007 Male, age 72, unknown 109.4
1816 Male, age 51, unknown 107.6
2667 Female, age 75, unknown 107.3
1944 Female, age 72, unknown 107.1
1815 Male, age 53, unknown 105.9
2825 Male, age 18, unknown 105.7
2407 Male, age 75, both hemispheres 105.5
2224 Female, age 72, unknown 105.2
2273 Male, age 74, both hemispheres 105.0
2316 Male, age 76, right hemisphere 99.4
Red nucleus
nTPM: 106.7
2725 Female, age 75, unknown 114.5
2503 Female, age 72, unknown 109.7
2588 Male, age 74, left hemisphere 108.0
2785 Male, age 18, unknown 107.8
1865 Male, age 51, unknown 106.8
2769 Male, age 72, unknown 106.0
2227 Male, age 72, unknown 105.9
1821 Female, age 72, unknown 105.8
2584 Male, age 75, left hemisphere 105.4
1904 Male, age 53, unknown 104.2
1954 Female, age 42, unknown 104.0
2823 Male, age 76, right hemisphere 102.8
Substantia nigra
nTPM: 105.3
2699 Male, age 18, unknown 111.2
1916 Female, age 42, unknown 109.7
1941 Male, age 53, unknown 108.5
2665 Male, age 74, both hemispheres 107.3
1889 Female, age 72, unknown 106.5
1851 Male, age 51, unknown 105.5
2583 Male, age 75, right hemisphere 104.2
2590 Female, age 75, unknown 100.6
2241 Male, age 72, unknown 99.6
2409 Female, age 72, unknown 99.6
Superior colliculus
nTPM: 104.3
2587 Male, age 74, left hemisphere 106.4
1796 Male, age 53, unknown 106.2
1913 Female, age 42, unknown 105.7
1839 Male, age 51, unknown 104.7
1895 Male, age 76, right hemisphere 104.7
1995 Male, age 72, unknown 104.3
2668 Female, age 75, unknown 103.3
2664 Male, age 75, both hemispheres 102.9
2087 Female, age 72, unknown 102.6
2261 Male, age 18, unknown 102.0
Ventral tegmental area
nTPM: 105.1
1915 Female, age 42, unknown 109.0
2223 Female, age 72, unknown 107.4
2218 Male, age 76, both hemispheres 106.0
2410 Female, age 72, unknown 104.4
1942 Male, age 51, unknown 103.5
2021 Male, age 53, unknown 100.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 97.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.0
Samples: 139

Max nTPM: 210.8
Min nTPM: 55.5
Std nTPM: 26.7
Median nTPM: 90.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 210.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 205.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 185.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 177.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 176.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 163.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 157.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 152.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 148.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 145.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 135.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 202.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 202.6
FF:10158-103A5 76 years, female 202.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.8
Pig sample Sample description nTPM
Midbrain
nTPM: 42.2
Samples: 4

Max nTPM: 45.3
Min nTPM: 39.3
Sample A Female 45.3
Sample B Female 41.9
Sample C Male 42.2
Sample D Male 39.3
Periaqueductal gray
nTPM: 43.8
Samples: 3

Max nTPM: 49.5
Min nTPM: 37.7
Sample B Female 44.2
Sample C Male 49.5
Sample D Male 37.7
Substantia nigra
nTPM: 37.1
Samples: 4

Max nTPM: 45.7
Min nTPM: 30.0
Sample A Female 45.7
Sample B Female 30.0
Sample C Male 42.3
Sample D Male 30.2
Superior colliculi
nTPM: 42.3
Samples: 4

Max nTPM: 49.1
Min nTPM: 31.0
Sample A Female 49.1
Sample B Female 31.0
Sample C Male 45.7
Sample D Male 43.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 134.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 134.3
Samples: 4

Max nTPM: 137.9
Min nTPM: 131.0
Sample A Male 137.9
Sample B Male 131.0
Sample C Female 131.8
Sample D Female 136.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
2442 Antisense, RP_Baylor_253947, Mouse strain C57BL/6J (56 days, male) 9.5
68302329 Antisense, RP_041130_02_F06, Mouse strain C57BL/6J (56 days, male) 4.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.