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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:385.4 nTPM
HPA:385.4 nTPM
GTEx:477.7 nTPM
FANTOM5:2013.8 Scaled Tags Per Million
Pig:1020.6 nTPM
Mouse:683.8 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 385.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 317.7
2411 Female, age 72, unknown 561.0
2019 Male, age 18, unknown 423.4
1870 Female, age 42, unknown 418.9
1830 Male, age 51, unknown 400.8
1833 Male, age 53, unknown 342.4
2828 Female, age 72, unknown 300.8
1827 Male, age 72, unknown 222.8
2219 Male, age 76, both hemispheres 215.1
2666 Male, age 74, left hemisphere 156.8
2586 Male, age 75, left hemisphere 134.8
Dorsal raphe nucleus
nTPM: 280.5
2750 Male, age 76, both hemispheres 547.1
2016 Female, age 72, unknown 256.2
1828 Male, age 53, unknown 233.3
2298 Female, age 72, unknown 201.4
2047 Male, age 72, unknown 164.3
Inferior colliculus
nTPM: 201.1
1848 Female, age 42, unknown 227.2
1890 Male, age 53, unknown 220.9
2097 Female, age 72, unknown 192.9
2849 Male, age 72, unknown 163.3
Median raphe nucleus
nTPM: 258.1
2220 Male, age 76, midline 258.1
Pedunculopontine tegmental nucleus
nTPM: 378.9
2338 Male, age 61, both hemispheres 406.8
2334 Male, age 80, both hemispheres 396.7
1921 Female, age 85, both hemispheres 333.1
Periaquaductal grey, anterior
nTPM: 169.4
2502 Female, age 75, unknown 186.0
1947 Male, age 18, unknown 178.0
1795 Male, age 51, unknown 144.3
Periaquaductal grey, dorsal
nTPM: 147.6
2464 Female, age 72, unknown 253.0
1831 Male, age 72, unknown 156.3
1840 Male, age 53, unknown 93.5
2850 Male, age 76, both hemispheres 87.7
Periaquaductal grey, lateral
nTPM: 180.3
2272 Male, age 74, both hemispheres 234.6
2053 Male, age 18, unknown 207.8
2140 Male, age 76, both hemispheres 98.5
Pretectal area
nTPM: 209.8
2316 Male, age 76, right hemisphere 286.9
2273 Male, age 74, both hemispheres 260.1
1815 Male, age 53, unknown 252.2
2407 Male, age 75, both hemispheres 231.5
2007 Male, age 72, unknown 214.2
2667 Female, age 75, unknown 211.9
1817 Female, age 42, unknown 211.5
2825 Male, age 18, unknown 197.7
2224 Female, age 72, unknown 185.1
1944 Female, age 72, unknown 142.1
1816 Male, age 51, unknown 114.9
Red nucleus
nTPM: 385.4
1821 Female, age 72, unknown 527.9
1865 Male, age 51, unknown 467.5
1904 Male, age 53, unknown 446.1
2823 Male, age 76, right hemisphere 439.2
2227 Male, age 72, unknown 434.8
2769 Male, age 72, unknown 434.0
2785 Male, age 18, unknown 399.1
2503 Female, age 72, unknown 372.1
1954 Female, age 42, unknown 367.6
2588 Male, age 74, left hemisphere 273.5
2725 Female, age 75, unknown 255.6
2584 Male, age 75, left hemisphere 208.0
Substantia nigra
nTPM: 207.5
1851 Male, age 51, unknown 260.9
1889 Female, age 72, unknown 257.3
2590 Female, age 75, unknown 235.0
2409 Female, age 72, unknown 219.5
1941 Male, age 53, unknown 216.4
2241 Male, age 72, unknown 204.4
2583 Male, age 75, right hemisphere 202.6
1916 Female, age 42, unknown 199.6
2699 Male, age 18, unknown 159.6
2665 Male, age 74, both hemispheres 119.9
Superior colliculus
nTPM: 235.8
1895 Male, age 76, right hemisphere 320.6
1913 Female, age 42, unknown 317.0
2587 Male, age 74, left hemisphere 309.9
1995 Male, age 72, unknown 304.7
1839 Male, age 51, unknown 246.6
2668 Female, age 75, unknown 230.8
1796 Male, age 53, unknown 202.3
2087 Female, age 72, unknown 164.7
2261 Male, age 18, unknown 141.2
2664 Male, age 75, both hemispheres 120.5
Ventral tegmental area
nTPM: 307.1
2223 Female, age 72, unknown 521.8
2410 Female, age 72, unknown 363.4
1942 Male, age 51, unknown 259.7
2021 Male, age 53, unknown 244.4
2218 Male, age 76, both hemispheres 231.2
1915 Female, age 42, unknown 222.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 477.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 477.7
Samples: 139

Max nTPM: 2409.5
Min nTPM: 134.2
Std nTPM: 319.2
Median nTPM: 392.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 2409.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1511.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1343.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1332.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1279.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1224.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1222.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 1161.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 1075.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 919.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 909.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2013.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2013.8
FF:10158-103A5 76 years, female 2013.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 1020.6
Pig sample Sample description nTPM
Midbrain
nTPM: 1020.6
Samples: 4

Max nTPM: 2680.7
Min nTPM: 356.1
Sample A Female 2680.7
Sample B Female 675.2
Sample C Male 370.2
Sample D Male 356.1
Periaqueductal gray
nTPM: 417.7
Samples: 3

Max nTPM: 577.5
Min nTPM: 290.8
Sample B Female 577.5
Sample C Male 290.8
Sample D Male 384.9
Substantia nigra
nTPM: 742.5
Samples: 4

Max nTPM: 1250.4
Min nTPM: 395.4
Sample A Female 795.7
Sample B Female 395.4
Sample C Male 528.5
Sample D Male 1250.4
Superior colliculi
nTPM: 588.3
Samples: 4

Max nTPM: 728.9
Min nTPM: 291.6
Sample A Female 728.9
Sample B Female 291.6
Sample C Male 637.8
Sample D Male 694.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 683.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 683.8
Samples: 4

Max nTPM: 722.9
Min nTPM: 629.1
Sample A Male 670.3
Sample B Male 629.1
Sample C Female 722.9
Sample D Female 713.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
68795444 Antisense, RP_041130_01_F08, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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