ABOUTMENU
HELP
NEWS
SPAG7
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.1 nTPM
HPA:56.1 nTPM
GTEx:57.2 nTPM
FANTOM5:53.7 Scaled Tags Per Million
Mouse:74.8 nTPM
Allen mouse:8.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.4
1827 Male, age 72, unknown 57.2
2019 Male, age 18, unknown 56.3
1870 Female, age 42, unknown 55.0
2828 Female, age 72, unknown 54.7
2666 Male, age 74, left hemisphere 54.4
2411 Female, age 72, unknown 53.8
1833 Male, age 53, unknown 53.6
2586 Male, age 75, left hemisphere 53.6
1830 Male, age 51, unknown 52.7
2219 Male, age 76, both hemispheres 52.6
Dorsal raphe nucleus
nTPM: 53.3
1828 Male, age 53, unknown 55.0
2298 Female, age 72, unknown 54.1
2047 Male, age 72, unknown 53.2
2750 Male, age 76, both hemispheres 52.6
2016 Female, age 72, unknown 51.4
Inferior colliculus
nTPM: 53.6
1890 Male, age 53, unknown 54.2
2097 Female, age 72, unknown 53.9
2849 Male, age 72, unknown 53.3
1848 Female, age 42, unknown 52.9
Median raphe nucleus
nTPM: 54.4
2220 Male, age 76, midline 54.4
Pedunculopontine tegmental nucleus
nTPM: 54.7
2334 Male, age 80, both hemispheres 55.9
2338 Male, age 61, both hemispheres 55.2
1921 Female, age 85, both hemispheres 52.8
Periaquaductal grey, anterior
nTPM: 53.5
1795 Male, age 51, unknown 54.9
2502 Female, age 75, unknown 53.4
1947 Male, age 18, unknown 52.3
Periaquaductal grey, dorsal
nTPM: 53.3
2850 Male, age 76, both hemispheres 55.2
1831 Male, age 72, unknown 54.2
1840 Male, age 53, unknown 52.0
2464 Female, age 72, unknown 51.7
Periaquaductal grey, lateral
nTPM: 53.7
2272 Male, age 74, both hemispheres 55.5
2140 Male, age 76, both hemispheres 53.5
2053 Male, age 18, unknown 52.0
Pretectal area
nTPM: 56.1
1817 Female, age 42, unknown 59.7
1816 Male, age 51, unknown 59.2
1944 Female, age 72, unknown 58.4
2007 Male, age 72, unknown 57.5
1815 Male, age 53, unknown 56.9
2667 Female, age 75, unknown 55.8
2825 Male, age 18, unknown 55.2
2407 Male, age 75, both hemispheres 54.2
2224 Female, age 72, unknown 54.1
2273 Male, age 74, both hemispheres 54.1
2316 Male, age 76, right hemisphere 52.2
Red nucleus
nTPM: 55.5
2503 Female, age 72, unknown 57.8
2725 Female, age 75, unknown 57.4
1821 Female, age 72, unknown 56.6
1865 Male, age 51, unknown 56.2
2785 Male, age 18, unknown 55.6
2823 Male, age 76, right hemisphere 55.6
1954 Female, age 42, unknown 55.1
2769 Male, age 72, unknown 55.0
2227 Male, age 72, unknown 54.8
1904 Male, age 53, unknown 54.5
2588 Male, age 74, left hemisphere 54.0
2584 Male, age 75, left hemisphere 53.7
Substantia nigra
nTPM: 56.0
1916 Female, age 42, unknown 61.3
1941 Male, age 53, unknown 59.0
1889 Female, age 72, unknown 57.3
2699 Male, age 18, unknown 56.5
1851 Male, age 51, unknown 55.8
2583 Male, age 75, right hemisphere 54.8
2590 Female, age 75, unknown 54.7
2665 Male, age 74, both hemispheres 54.5
2409 Female, age 72, unknown 53.3
2241 Male, age 72, unknown 52.5
Superior colliculus
nTPM: 54.7
2587 Male, age 74, left hemisphere 57.0
2087 Female, age 72, unknown 56.4
2261 Male, age 18, unknown 56.0
1895 Male, age 76, right hemisphere 55.0
1796 Male, age 53, unknown 54.5
1995 Male, age 72, unknown 54.3
2668 Female, age 75, unknown 54.2
1913 Female, age 42, unknown 53.6
1839 Male, age 51, unknown 53.1
2664 Male, age 75, both hemispheres 52.5
Ventral tegmental area
nTPM: 54.8
1915 Female, age 42, unknown 57.0
2218 Male, age 76, both hemispheres 57.0
2223 Female, age 72, unknown 55.2
2410 Female, age 72, unknown 54.5
1942 Male, age 51, unknown 53.2
2021 Male, age 53, unknown 52.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.2
Samples: 139

Max nTPM: 97.7
Min nTPM: 28.4
Std nTPM: 12.0
Median nTPM: 56.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 97.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 89.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 85.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 84.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 83.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 82.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 81.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 81.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 80.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 79.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 78.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.7
FF:10158-103A5 76 years, female 53.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.8
Samples: 4

Max nTPM: 77.4
Min nTPM: 72.3
Sample A Male 77.4
Sample B Male 73.1
Sample C Female 72.3
Sample D Female 76.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
69014949 Antisense, RP_050310_02_A09, Mouse strain C57BL/6J (56 days, male) 8.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.