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JPH4
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.5 nTPM
HPA:88.5 nTPM
GTEx:163.8 nTPM
FANTOM5:437.8 Scaled Tags Per Million
Pig:129.5 nTPM
Mouse:146.5 nTPM
Allen mouse:14.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 88.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 86.4
2290 Female, age 72, unknown 117.4
2289 Male, age 61, right hemisphere 108.9
2288 Male, age 75, left hemisphere 106.3
1857 Female, age 85, left hemisphere 94.1
1781 Male, age 74, unknown 84.2
2846 Female, age 79, unknown 80.8
1854 Male, age 80, left hemisphere 74.3
2481 Female, age 94, left hemisphere 25.2
Claustrum
nTPM: 58.6
2284 Female, age 91, both hemispheres 91.2
2491 Male, age 75, both hemispheres 86.2
2568 Male, age 61, both hemispheres 84.9
2645 Female, age 72, unknown 72.9
2198 Male, age 80, both hemispheres 53.2
2392 Female, age 94, both hemispheres 48.3
1956 Male, age 74, unknown 36.6
2196 Female, age 79, unknown 34.0
2292 Female, age 85, both hemispheres 19.6
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.3
2483 Female, age 94, right hemisphere 2.5
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 78.6
2824 Male, age 61, right hemisphere 129.0
1783 Male, age 74, unknown 120.1
1856 Female, age 91, right hemisphere 109.0
1806 Female, age 85, left hemisphere 94.5
2286 Male, age 75, left hemisphere 89.4
2698 Female, age 72, unknown 49.3
2732 Male, age 80, right hemisphere 28.8
2391 Female, age 94, left hemisphere 9.1
Nucleus basalis of Meynert
nTPM: 54.5
2484 Female, age 94, left hemisphere 81.3
2393 Male, age 80, right hemisphere 66.4
2821 Male, age 75, both hemispheres 51.8
2569 Male, age 61, both hemispheres 18.6
Nucleus of the diagonal band
nTPM: 82.9
2029 Male, age 61, right hemisphere 107.6
2195 Female, age 85, both hemispheres 93.6
1812 Female, age 91, both hemispheres 85.1
2775 Male, age 80, right hemisphere 77.9
1979 Male, age 74, unknown 50.1
Olfactory tubercle
nTPM: 84.8
2487 Female, age 94, left hemisphere 98.3
1998 Female, age 91, both hemispheres 96.4
2856 Male, age 75, right hemisphere 92.1
1846 Male, age 80, right hemisphere 52.4
Putamen
nTPM: 88.5
2647 Male, age 75, left hemisphere 112.1
1838 Male, age 80, right hemisphere 104.7
1937 Female, age 91, right hemisphere 95.5
2489 Female, age 72, unknown 92.9
2466 Female, age 79, unknown 90.1
1829 Male, age 74, unknown 89.7
2482 Female, age 94, left hemisphere 34.7
Septal nuclei
nTPM: 62.5
1960 Male, age 74, unknown 108.0
2059 Female, age 85, both hemispheres 83.4
2009 Female, age 91, both hemispheres 69.9
2031 Female, age 72, unknown 69.0
2629 Female, age 94, right hemisphere 67.4
2394 Male, age 61, left hemisphere 32.1
2199 Male, age 80, right hemisphere 7.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 163.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 133.5
Samples: 246

Max nTPM: 273.0
Min nTPM: 11.6
Std nTPM: 65.9
Median nTPM: 134.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 273.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 268.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 258.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 254.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 250.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 247.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 247.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 244.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 244.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 241.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 239.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 163.8
Samples: 246

Max nTPM: 294.7
Min nTPM: 5.3
Std nTPM: 71.3
Median nTPM: 184.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 294.7
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 292.0
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 289.8
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 284.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 279.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 276.8
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 270.6
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 267.9
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 265.7
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 263.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 258.1
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Brain - Putamen (basal ganglia)
Average nTPM: 116.2
Samples: 205

Max nTPM: 245.1
Min nTPM: 7.9
Std nTPM: 61.8
Median nTPM: 117.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 245.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 241.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 230.6
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 226.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 225.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 223.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 222.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 215.2
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 215.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 214.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 212.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 437.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 437.8
FF:10164-103B2 76 years, female 437.8
Globus pallidus
Scaled Tags Per Million: 136.7
FF:10175-103C4 60 years, female 191.0
FF:10161-103A8 76 years, female 82.5
Nucleus accumbens
Scaled Tags Per Million: 391.7
FF:10037-101F1 23-56 years, mixed 391.7
Putamen
Scaled Tags Per Million: 366.4
FF:10176-103C5 60 years, female 366.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 129.5
Pig sample Sample description nTPM
Caudate
nTPM: 129.5
Samples: 4

Max nTPM: 159.5
Min nTPM: 103.5
Sample A Female 103.5
Sample B Female 133.9
Sample C Male 159.5
Sample D Male 121.2
Putamen
nTPM: 105.2
Samples: 4

Max nTPM: 137.4
Min nTPM: 41.8
Sample A Female 41.8
Sample B Female 109.7
Sample C Male 137.4
Sample D Male 131.8
Septum
nTPM: 72.5
Samples: 4

Max nTPM: 93.6
Min nTPM: 49.9
Sample A Female 93.6
Sample B Female 91.9
Sample C Male 49.9
Sample D Male 54.4
Ventral pallidum
nTPM: 91.6
Samples: 4

Max nTPM: 103.1
Min nTPM: 68.4
Sample A Female 102.8
Sample B Female 103.1
Sample C Male 68.4
Sample D Male 92.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 146.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 146.5
Samples: 4

Max nTPM: 162.9
Min nTPM: 131.0
Sample A Male 142.3
Sample B Male 162.9
Sample C Female 131.0
Sample D Female 149.8
Septum
nTPM: 68.4
Samples: 4

Max nTPM: 77.5
Min nTPM: 62.9
Sample A Male 77.5
Sample B Male 70.3
Sample C Female 62.9
Sample D Female 62.9
Ventral forebrain
nTPM: 117.5
Samples: 4

Max nTPM: 132.2
Min nTPM: 102.9
Sample A Male 122.9
Sample B Male 102.9
Sample C Female 132.2
Sample D Female 112.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 14.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 14.4
75831724 Antisense, RP_060601_02_A09, Mouse strain C57BL/6J (56 days, male) 14.4
Pallidum
Expression energy: 11.1
75831724 Antisense, RP_060601_02_A09, Mouse strain C57BL/6J (56 days, male) 11.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.