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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:142.9 nTPM
HPA:142.9 nTPM
GTEx:119.6 nTPM
FANTOM5:89.8 Scaled Tags Per Million
Pig:3.6 nTPM
Mouse:15.2 nTPM
Allen mouse:1.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040052
Glial cells Not detected
Neuronal cells Not detected

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 142.9
Sample id Sample description nTPM
Hippocampus
nTPM: 126.8
2529 Female, age 94, left hemisphere 130.8
2621 Female, age 67, right hemisphere 129.8
1911 Female, age 85, right hemisphere 129.2
1898 Male, age 80, left hemisphere 126.4
1855 Male, age 76, left hemisphere 122.6
2148 Female, age 91, left hemisphere 122.2
Dentate gyrus
nTPM: 128.6
2530 Female, age 94, left hemisphere 140.2
2010 Male, age 76, both hemispheres 138.4
2528 Male, age 74, both hemispheres 128.0
2246 Female, age 85, both hemispheres 123.5
2531 Female, age 67, both hemispheres 121.5
1927 Female, age 91, both hemispheres 120.0
Entorhinal gyrus
nTPM: 129.3
2117 Female, age 91, right hemisphere 153.7
2764 Male, age 80, right hemisphere 128.9
1938 Female, age 85, left hemisphere 126.3
1787 Male, age 76, left hemisphere 123.7
2613 Female, age 94, left hemisphere 122.2
2686 Male, age 75, right hemisphere 120.9
Hippocampus, CA1
nTPM: 119.2
2527 Male, age 74, both hemispheres 124.3
2082 Female, age 91, right hemisphere 120.6
1873 Female, age 85, both hemispheres 120.5
2749 Male, age 80, left hemisphere 116.3
2045 Male, age 76, both hemispheres 114.5
Hippocampus, CA2
nTPM: 128.8
1963 Male, age 80, left hemisphere 140.0
2437 Female, age 94, left hemisphere 129.8
1940 Female, age 85, left hemisphere 128.6
2249 Male, age 74, both hemispheres 128.5
2113 Female, age 91, right hemisphere 125.9
1892 Male, age 76, both hemispheres 120.0
Hippocampus, CA3
nTPM: 122.4
1891 Female, age 85, both hemispheres 139.5
1867 Male, age 76, both hemispheres 131.6
2436 Male, age 74, both hemispheres 121.0
2137 Male, age 80, left hemisphere 115.9
2620 Female, age 94, left hemisphere 113.6
2861 Female, age 67, both hemispheres 112.6
Parahippocampal cortex
nTPM: 125.5
2692 Male, age 74, both hemispheres 141.3
2532 Female, age 72, left hemisphere 134.8
2018 Male, age 76, both hemispheres 131.8
1990 Female, age 91, right hemisphere 128.5
2245 Female, age 91, both hemispheres 125.2
1850 Male, age 80, both hemispheres 124.6
1933 Female, age 85, both hemispheres 121.2
2693 Female, age 94, both hemispheres 118.1
2250 Female, age 67, right hemisphere 115.4
2622 Female, age 67, right hemisphere 113.8
Perirhinal gyrus
nTPM: 116.7
2848 Male, age 76, right hemisphere 119.6
2521 Female, age 94, right hemisphere 117.6
1794 Male, age 80, right hemisphere 116.1
1847 Female, age 91, left hemisphere 116.0
1841 Female, age 85, right hemisphere 114.3
Subiculum
nTPM: 142.9
2042 Male, age 76, both hemispheres 163.9
2438 Female, age 94, left hemisphere 151.0
1901 Male, age 80, both hemispheres 148.9
2619 Male, age 74, both hemispheres 132.6
1977 Female, age 85, both hemispheres 131.5
2729 Female, age 91, right hemisphere 129.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 119.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 119.6
Samples: 197

Max nTPM: 398.9
Min nTPM: 9.9
Std nTPM: 68.4
Median nTPM: 105.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 398.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 332.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 294.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 280.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 275.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 272.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 271.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 260.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 259.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 259.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 254.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 89.8
FF:10153-102I9 76 years, female 103.2
FF:10169-103B7 60 years, female 76.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 3.7
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 3.7
Sample C Male 3.9
Sample D Male 3.7
Entorhinal cortex
nTPM: 3.1
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.9
Sample A Female 2.9
Sample B Female 3.0
Sample C Male 3.3
Sample D Male 3.2
Subiculum
nTPM: 3.3
Samples: 4

Max nTPM: 3.8
Min nTPM: 3.1
Sample A Female 3.2
Sample B Female 3.8
Sample C Male 3.1
Sample D Male 3.2
Ventral hippocampus
nTPM: 3.6
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 3.7
Sample C Male 3.3
Sample D Male 3.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 15.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.8
Samples: 4

Max nTPM: 10.6
Min nTPM: 4.2
Sample A Male 7.6
Sample B Male 4.9
Sample C Female 10.6
Sample D Female 4.2
Hippocampal formation
nTPM: 15.2
Samples: 4

Max nTPM: 17.2
Min nTPM: 13.2
Sample A Male 17.1
Sample B Male 17.2
Sample C Female 13.2
Sample D Female 13.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.5
69540351 Antisense, RP_050426_01_E11, Mouse strain C57BL/6J (56 days, male) 1.5

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