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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:194.9 nTPM
HPA:194.9 nTPM
GTEx:180.3 nTPM
FANTOM5:396.1 Scaled Tags Per Million
Pig:6.1 nTPM
Mouse:3.3 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 194.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 158.7
2019 Male, age 18, unknown 187.0
1830 Male, age 51, unknown 174.5
1833 Male, age 53, unknown 172.6
2411 Female, age 72, unknown 172.1
1870 Female, age 42, unknown 171.0
2828 Female, age 72, unknown 150.4
2666 Male, age 74, left hemisphere 148.0
2219 Male, age 76, both hemispheres 140.2
1827 Male, age 72, unknown 138.1
2586 Male, age 75, left hemisphere 133.2
Dorsal raphe nucleus
nTPM: 144.3
2750 Male, age 76, both hemispheres 187.5
1828 Male, age 53, unknown 143.2
2016 Female, age 72, unknown 141.8
2047 Male, age 72, unknown 128.3
2298 Female, age 72, unknown 120.7
Inferior colliculus
nTPM: 139.3
2849 Male, age 72, unknown 142.7
1848 Female, age 42, unknown 142.1
1890 Male, age 53, unknown 139.2
2097 Female, age 72, unknown 133.3
Median raphe nucleus
nTPM: 144.7
2220 Male, age 76, midline 144.7
Pedunculopontine tegmental nucleus
nTPM: 156.9
2338 Male, age 61, both hemispheres 161.0
2334 Male, age 80, both hemispheres 159.5
1921 Female, age 85, both hemispheres 150.3
Periaquaductal grey, anterior
nTPM: 128.5
2502 Female, age 75, unknown 130.5
1947 Male, age 18, unknown 130.3
1795 Male, age 51, unknown 124.6
Periaquaductal grey, dorsal
nTPM: 126.4
2464 Female, age 72, unknown 141.7
1831 Male, age 72, unknown 129.9
1840 Male, age 53, unknown 117.3
2850 Male, age 76, both hemispheres 116.6
Periaquaductal grey, lateral
nTPM: 129.6
2272 Male, age 74, both hemispheres 137.7
2053 Male, age 18, unknown 133.2
2140 Male, age 76, both hemispheres 117.9
Pretectal area
nTPM: 138.7
1815 Male, age 53, unknown 157.4
2316 Male, age 76, right hemisphere 155.6
1817 Female, age 42, unknown 150.4
2007 Male, age 72, unknown 144.9
2407 Male, age 75, both hemispheres 140.0
2273 Male, age 74, both hemispheres 136.6
2825 Male, age 18, unknown 133.5
1944 Female, age 72, unknown 127.9
2224 Female, age 72, unknown 127.4
1816 Male, age 51, unknown 126.6
2667 Female, age 75, unknown 125.0
Red nucleus
nTPM: 194.9
2823 Male, age 76, right hemisphere 246.4
1821 Female, age 72, unknown 228.8
1865 Male, age 51, unknown 209.3
1904 Male, age 53, unknown 208.2
2769 Male, age 72, unknown 191.5
2503 Female, age 72, unknown 191.3
2785 Male, age 18, unknown 191.1
1954 Female, age 42, unknown 188.8
2227 Male, age 72, unknown 188.2
2725 Female, age 75, unknown 176.6
2588 Male, age 74, left hemisphere 169.6
2584 Male, age 75, left hemisphere 149.5
Substantia nigra
nTPM: 143.9
1889 Female, age 72, unknown 160.1
2590 Female, age 75, unknown 157.9
2409 Female, age 72, unknown 155.1
1851 Male, age 51, unknown 151.2
2583 Male, age 75, right hemisphere 143.2
2699 Male, age 18, unknown 139.7
2241 Male, age 72, unknown 137.4
1941 Male, age 53, unknown 134.4
1916 Female, age 42, unknown 134.1
2665 Male, age 74, both hemispheres 125.9
Superior colliculus
nTPM: 147.3
1895 Male, age 76, right hemisphere 165.2
2587 Male, age 74, left hemisphere 163.5
1913 Female, age 42, unknown 163.0
1995 Male, age 72, unknown 161.2
2668 Female, age 75, unknown 153.4
1839 Male, age 51, unknown 148.6
1796 Male, age 53, unknown 135.8
2087 Female, age 72, unknown 128.7
2664 Male, age 75, both hemispheres 127.3
2261 Male, age 18, unknown 126.6
Ventral tegmental area
nTPM: 149.9
2223 Female, age 72, unknown 171.0
2410 Female, age 72, unknown 170.7
2218 Male, age 76, both hemispheres 142.6
2021 Male, age 53, unknown 140.7
1942 Male, age 51, unknown 137.7
1915 Female, age 42, unknown 136.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 180.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 180.3
Samples: 139

Max nTPM: 567.6
Min nTPM: 45.5
Std nTPM: 98.1
Median nTPM: 159.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 567.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 498.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 464.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 448.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 446.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 408.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 400.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 397.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 341.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 339.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 335.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 396.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 396.1
FF:10158-103A5 76 years, female 396.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.1
Pig sample Sample description nTPM
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 5.7
Min nTPM: 3.2
Sample A Female 5.3
Sample B Female 5.7
Sample C Male 3.6
Sample D Male 3.2
Periaqueductal gray
nTPM: 6.1
Samples: 3

Max nTPM: 7.2
Min nTPM: 4.9
Sample B Female 6.1
Sample C Male 7.2
Sample D Male 4.9
Substantia nigra
nTPM: 5.5
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 7.1
Sample C Male 5.3
Sample D Male 5.2
Superior colliculi
nTPM: 3.6
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.0
Sample A Female 3.5
Sample B Female 3.6
Sample C Male 3.0
Sample D Male 4.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.3
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.0
Sample A Male 4.1
Sample B Male 3.4
Sample C Female 2.0
Sample D Female 3.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
69540351 Antisense, RP_050426_01_E11, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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