ABOUTMENU
HELP
NEWS
SNAP23
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.9 nTPM
HPA:25.9 nTPM
GTEx:21.3 nTPM
FANTOM5:89.7 Scaled Tags Per Million
Pig:19.5 nTPM
Mouse:10.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.9
1830 Male, age 51, unknown 26.5
1870 Female, age 42, unknown 26.1
1833 Male, age 53, unknown 24.7
2019 Male, age 18, unknown 24.3
2666 Male, age 74, left hemisphere 24.2
2828 Female, age 72, unknown 24.2
2411 Female, age 72, unknown 24.1
2219 Male, age 76, both hemispheres 22.6
1827 Male, age 72, unknown 21.9
2586 Male, age 75, left hemisphere 20.8
Dorsal raphe nucleus
nTPM: 22.6
2016 Female, age 72, unknown 25.1
1828 Male, age 53, unknown 22.9
2750 Male, age 76, both hemispheres 22.7
2298 Female, age 72, unknown 22.1
2047 Male, age 72, unknown 20.2
Inferior colliculus
nTPM: 22.0
1848 Female, age 42, unknown 23.6
2849 Male, age 72, unknown 21.6
2097 Female, age 72, unknown 21.5
1890 Male, age 53, unknown 21.4
Median raphe nucleus
nTPM: 23.6
2220 Male, age 76, midline 23.6
Pedunculopontine tegmental nucleus
nTPM: 24.8
2338 Male, age 61, both hemispheres 29.6
2334 Male, age 80, both hemispheres 24.2
1921 Female, age 85, both hemispheres 20.7
Periaquaductal grey, anterior
nTPM: 21.4
2502 Female, age 75, unknown 22.7
1947 Male, age 18, unknown 21.7
1795 Male, age 51, unknown 19.7
Periaquaductal grey, dorsal
nTPM: 22.3
1831 Male, age 72, unknown 23.2
2464 Female, age 72, unknown 23.0
2850 Male, age 76, both hemispheres 22.2
1840 Male, age 53, unknown 20.8
Periaquaductal grey, lateral
nTPM: 23.3
2140 Male, age 76, both hemispheres 23.7
2272 Male, age 74, both hemispheres 23.3
2053 Male, age 18, unknown 23.0
Pretectal area
nTPM: 22.4
2667 Female, age 75, unknown 24.5
2273 Male, age 74, both hemispheres 24.4
2407 Male, age 75, both hemispheres 23.9
2316 Male, age 76, right hemisphere 23.8
1815 Male, age 53, unknown 22.9
1817 Female, age 42, unknown 22.5
2825 Male, age 18, unknown 21.5
2224 Female, age 72, unknown 21.4
1944 Female, age 72, unknown 21.3
2007 Male, age 72, unknown 20.4
1816 Male, age 51, unknown 19.7
Red nucleus
nTPM: 25.9
1954 Female, age 42, unknown 28.7
1865 Male, age 51, unknown 28.6
1904 Male, age 53, unknown 28.2
2227 Male, age 72, unknown 28.1
1821 Female, age 72, unknown 26.9
2503 Female, age 72, unknown 26.1
2769 Male, age 72, unknown 26.0
2785 Male, age 18, unknown 25.9
2823 Male, age 76, right hemisphere 24.3
2588 Male, age 74, left hemisphere 22.8
2584 Male, age 75, left hemisphere 22.5
2725 Female, age 75, unknown 22.5
Substantia nigra
nTPM: 23.3
2699 Male, age 18, unknown 25.7
2409 Female, age 72, unknown 25.2
2241 Male, age 72, unknown 24.9
2583 Male, age 75, right hemisphere 24.7
2590 Female, age 75, unknown 24.6
1851 Male, age 51, unknown 23.2
1941 Male, age 53, unknown 22.1
2665 Male, age 74, both hemispheres 22.0
1889 Female, age 72, unknown 21.2
1916 Female, age 42, unknown 19.8
Superior colliculus
nTPM: 23.2
1995 Male, age 72, unknown 26.1
1913 Female, age 42, unknown 25.9
2587 Male, age 74, left hemisphere 24.7
1839 Male, age 51, unknown 24.3
1895 Male, age 76, right hemisphere 23.6
2087 Female, age 72, unknown 22.5
1796 Male, age 53, unknown 21.3
2664 Male, age 75, both hemispheres 21.2
2668 Female, age 75, unknown 21.2
2261 Male, age 18, unknown 21.1
Ventral tegmental area
nTPM: 22.6
2223 Female, age 72, unknown 25.0
2021 Male, age 53, unknown 24.1
2410 Female, age 72, unknown 22.7
1942 Male, age 51, unknown 21.8
1915 Female, age 42, unknown 21.1
2218 Male, age 76, both hemispheres 20.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.3
Samples: 139

Max nTPM: 68.9
Min nTPM: 5.6
Std nTPM: 8.3
Median nTPM: 19.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 68.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 68.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 42.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 40.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 37.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 33.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 32.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 31.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 31.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 31.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 31.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.7
FF:10158-103A5 76 years, female 89.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.5
Pig sample Sample description nTPM
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 28.9
Min nTPM: 11.8
Sample A Female 28.9
Sample B Female 21.0
Sample C Male 11.8
Sample D Male 13.1
Periaqueductal gray
nTPM: 18.8
Samples: 3

Max nTPM: 21.2
Min nTPM: 16.8
Sample B Female 16.8
Sample C Male 18.5
Sample D Male 21.2
Substantia nigra
nTPM: 19.6
Samples: 4

Max nTPM: 23.3
Min nTPM: 16.4
Sample A Female 19.0
Sample B Female 19.5
Sample C Male 16.4
Sample D Male 23.3
Superior colliculi
nTPM: 15.5
Samples: 4

Max nTPM: 16.5
Min nTPM: 14.4
Sample A Female 16.0
Sample B Female 14.9
Sample C Male 14.4
Sample D Male 16.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 11.7
Min nTPM: 9.1
Sample A Male 9.9
Sample B Male 9.1
Sample C Female 11.7
Sample D Female 11.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69885570 Antisense, RP_050512_02_H07, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.