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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:46.9 nTPM
HPA:46.9 nTPM
GTEx:31.4 nTPM
FANTOM5:107.9 Scaled Tags Per Million
Pig:21.8 nTPM
Mouse:15.0 nTPM
Allen mouse:2.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035956
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 46.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.2
2288 Male, age 75, left hemisphere 42.5
2481 Female, age 94, left hemisphere 38.4
2289 Male, age 61, right hemisphere 36.1
1781 Male, age 74, unknown 35.8
2846 Female, age 79, unknown 35.7
1857 Female, age 85, left hemisphere 34.7
1854 Male, age 80, left hemisphere 34.5
2290 Female, age 72, unknown 31.8
Claustrum
nTPM: 40.0
2292 Female, age 85, both hemispheres 46.9
2196 Female, age 79, unknown 41.5
1956 Male, age 74, unknown 41.3
2491 Male, age 75, both hemispheres 40.5
2392 Female, age 94, both hemispheres 40.0
2568 Male, age 61, both hemispheres 38.9
2198 Male, age 80, both hemispheres 37.8
2284 Female, age 91, both hemispheres 37.4
2645 Female, age 72, unknown 36.2
Globus pallidus, externus
nTPM: 42.8
2567 Female, age 72, unknown 48.3
2646 Male, age 61, right hemisphere 45.4
1996 Male, age 80, right hemisphere 41.7
2395 Male, age 75, both hemispheres 39.8
2772 Female, age 79, unknown 38.6
Globus pallidus, internus
nTPM: 46.9
2287 Male, age 75, right hemisphere 52.9
2111 Female, age 85, right hemisphere 52.3
2566 Female, age 72, unknown 51.5
2778 Female, age 91, both hemispheres 46.4
2037 Male, age 80, right hemisphere 43.0
1818 Male, age 74, unknown 42.9
2483 Female, age 94, right hemisphere 39.3
Nucleus accumbens
nTPM: 37.8
2391 Female, age 94, left hemisphere 46.3
2286 Male, age 75, left hemisphere 40.6
2698 Female, age 72, unknown 40.4
2732 Male, age 80, right hemisphere 38.3
1806 Female, age 85, left hemisphere 35.5
1856 Female, age 91, right hemisphere 34.9
2824 Male, age 61, right hemisphere 33.3
1783 Male, age 74, unknown 33.0
Nucleus basalis of Meynert
nTPM: 37.5
2569 Male, age 61, both hemispheres 42.0
2821 Male, age 75, both hemispheres 40.1
2393 Male, age 80, right hemisphere 34.1
2484 Female, age 94, left hemisphere 33.6
Nucleus of the diagonal band
nTPM: 36.3
1812 Female, age 91, both hemispheres 38.5
1979 Male, age 74, unknown 37.0
2195 Female, age 85, both hemispheres 36.6
2775 Male, age 80, right hemisphere 35.7
2029 Male, age 61, right hemisphere 33.5
Olfactory tubercle
nTPM: 37.2
2856 Male, age 75, right hemisphere 38.5
2487 Female, age 94, left hemisphere 37.6
1846 Male, age 80, right hemisphere 36.7
1998 Female, age 91, both hemispheres 35.9
Putamen
nTPM: 36.5
2647 Male, age 75, left hemisphere 42.3
2482 Female, age 94, left hemisphere 40.3
2489 Female, age 72, unknown 38.6
1829 Male, age 74, unknown 36.9
1937 Female, age 91, right hemisphere 33.3
1838 Male, age 80, right hemisphere 33.0
2466 Female, age 79, unknown 31.0
Septal nuclei
nTPM: 35.3
2629 Female, age 94, right hemisphere 41.5
2199 Male, age 80, right hemisphere 36.4
2009 Female, age 91, both hemispheres 34.9
2394 Male, age 61, left hemisphere 34.7
2059 Female, age 85, both hemispheres 33.3
2031 Female, age 72, unknown 33.1
1960 Male, age 74, unknown 33.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.2
Samples: 246

Max nTPM: 45.8
Min nTPM: 20.4
Std nTPM: 4.4
Median nTPM: 28.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 45.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 45.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 43.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 40.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 40.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 39.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 38.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 38.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 37.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 37.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 37.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.1
Samples: 246

Max nTPM: 50.3
Min nTPM: 18.9
Std nTPM: 5.5
Median nTPM: 28.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 50.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 50.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 47.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 45.0
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 44.8
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 44.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 42.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 42.2
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 41.5
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 41.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 40.8
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Brain - Putamen (basal ganglia)
Average nTPM: 31.4
Samples: 205

Max nTPM: 64.2
Min nTPM: 22.5
Std nTPM: 5.4
Median nTPM: 30.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 64.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 48.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 48.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 44.6
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 44.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 43.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 42.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 41.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 41.0
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 40.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 40.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 107.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 75.3
FF:10164-103B2 76 years, female 75.3
Globus pallidus
Scaled Tags Per Million: 107.9
FF:10175-103C4 60 years, female 116.8
FF:10161-103A8 76 years, female 99.0
Nucleus accumbens
Scaled Tags Per Million: 85.7
FF:10037-101F1 23-56 years, mixed 85.7
Putamen
Scaled Tags Per Million: 70.4
FF:10176-103C5 60 years, female 70.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.8
Pig sample Sample description nTPM
Caudate
nTPM: 19.4
Samples: 4

Max nTPM: 20.5
Min nTPM: 18.5
Sample A Female 18.5
Sample B Female 18.9
Sample C Male 20.5
Sample D Male 19.5
Putamen
nTPM: 21.7
Samples: 4

Max nTPM: 22.9
Min nTPM: 20.8
Sample A Female 22.0
Sample B Female 20.8
Sample C Male 21.2
Sample D Male 22.9
Septum
nTPM: 19.7
Samples: 4

Max nTPM: 22.5
Min nTPM: 17.4
Sample A Female 20.7
Sample B Female 18.3
Sample C Male 17.4
Sample D Male 22.5
Ventral pallidum
nTPM: 21.8
Samples: 4

Max nTPM: 23.7
Min nTPM: 20.3
Sample A Female 20.3
Sample B Female 22.0
Sample C Male 21.0
Sample D Male 23.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 15.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 11.5
Samples: 4

Max nTPM: 14.3
Min nTPM: 10.3
Sample A Male 10.3
Sample B Male 11.2
Sample C Female 14.3
Sample D Female 10.3
Septum
nTPM: 15.1
Samples: 4

Max nTPM: 16.3
Min nTPM: 12.7
Sample A Male 16.3
Sample B Male 12.7
Sample C Female 15.8
Sample D Female 15.5
Ventral forebrain
nTPM: 14.7
Samples: 4

Max nTPM: 16.0
Min nTPM: 13.6
Sample A Male 16.0
Sample B Male 13.9
Sample C Female 13.6
Sample D Female 15.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.5
68666732 Antisense, RP_050126_02_G12, Mouse strain C57BL/6J (56 days, male) 1.5
Pallidum
Expression energy: 2.2
68666732 Antisense, RP_050126_02_G12, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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