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GGA1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.6 nTPM
HPA:37.6 nTPM
GTEx:33.1 nTPM
FANTOM5:43.2 Scaled Tags Per Million
Pig:18.2 nTPM
Mouse:6.3 nTPM
Allen mouse:14.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.6
2586 Male, age 75, left hemisphere 43.0
2411 Female, age 72, unknown 38.4
2219 Male, age 76, both hemispheres 37.7
2019 Male, age 18, unknown 37.6
1830 Male, age 51, unknown 37.5
2666 Male, age 74, left hemisphere 37.5
2828 Female, age 72, unknown 36.8
1833 Male, age 53, unknown 36.4
1870 Female, age 42, unknown 36.0
1827 Male, age 72, unknown 35.4
Dorsal raphe nucleus
nTPM: 36.8
1828 Male, age 53, unknown 39.3
2750 Male, age 76, both hemispheres 37.7
2047 Male, age 72, unknown 37.4
2016 Female, age 72, unknown 35.5
2298 Female, age 72, unknown 33.9
Inferior colliculus
nTPM: 33.2
2849 Male, age 72, unknown 34.7
1890 Male, age 53, unknown 34.1
1848 Female, age 42, unknown 32.8
2097 Female, age 72, unknown 31.1
Median raphe nucleus
nTPM: 34.8
2220 Male, age 76, midline 34.8
Pedunculopontine tegmental nucleus
nTPM: 35.6
2338 Male, age 61, both hemispheres 37.5
2334 Male, age 80, both hemispheres 35.2
1921 Female, age 85, both hemispheres 34.2
Periaquaductal grey, anterior
nTPM: 35.7
1795 Male, age 51, unknown 36.5
2502 Female, age 75, unknown 35.6
1947 Male, age 18, unknown 35.1
Periaquaductal grey, dorsal
nTPM: 33.5
2464 Female, age 72, unknown 35.1
1831 Male, age 72, unknown 33.8
1840 Male, age 53, unknown 32.8
2850 Male, age 76, both hemispheres 32.1
Periaquaductal grey, lateral
nTPM: 36.1
2272 Male, age 74, both hemispheres 38.1
2053 Male, age 18, unknown 35.5
2140 Male, age 76, both hemispheres 34.8
Pretectal area
nTPM: 35.3
2407 Male, age 75, both hemispheres 38.6
2316 Male, age 76, right hemisphere 37.8
2825 Male, age 18, unknown 36.6
2667 Female, age 75, unknown 35.7
2273 Male, age 74, both hemispheres 35.5
1815 Male, age 53, unknown 35.2
2007 Male, age 72, unknown 34.9
1817 Female, age 42, unknown 34.8
1816 Male, age 51, unknown 33.4
1944 Female, age 72, unknown 33.4
2224 Female, age 72, unknown 32.8
Red nucleus
nTPM: 37.5
2588 Male, age 74, left hemisphere 40.7
2584 Male, age 75, left hemisphere 40.0
2823 Male, age 76, right hemisphere 39.5
2769 Male, age 72, unknown 38.2
2227 Male, age 72, unknown 37.7
1904 Male, age 53, unknown 37.4
1865 Male, age 51, unknown 37.3
2785 Male, age 18, unknown 36.5
1954 Female, age 42, unknown 36.4
1821 Female, age 72, unknown 36.3
2503 Female, age 72, unknown 35.0
2725 Female, age 75, unknown 34.8
Substantia nigra
nTPM: 36.3
2583 Male, age 75, right hemisphere 39.8
2590 Female, age 75, unknown 38.9
2699 Male, age 18, unknown 38.2
1851 Male, age 51, unknown 37.9
1916 Female, age 42, unknown 37.0
2665 Male, age 74, both hemispheres 37.0
1941 Male, age 53, unknown 34.3
2409 Female, age 72, unknown 34.3
2241 Male, age 72, unknown 33.1
1889 Female, age 72, unknown 32.7
Superior colliculus
nTPM: 36.4
2664 Male, age 75, both hemispheres 39.7
1913 Female, age 42, unknown 38.8
1995 Male, age 72, unknown 38.3
1796 Male, age 53, unknown 37.4
2587 Male, age 74, left hemisphere 36.1
2668 Female, age 75, unknown 36.0
1839 Male, age 51, unknown 35.3
2087 Female, age 72, unknown 35.1
2261 Male, age 18, unknown 35.1
1895 Male, age 76, right hemisphere 32.0
Ventral tegmental area
nTPM: 36.3
2223 Female, age 72, unknown 38.0
1942 Male, age 51, unknown 37.3
2410 Female, age 72, unknown 36.9
1915 Female, age 42, unknown 35.5
2021 Male, age 53, unknown 35.5
2218 Male, age 76, both hemispheres 34.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.1
Samples: 139

Max nTPM: 55.8
Min nTPM: 20.8
Std nTPM: 5.6
Median nTPM: 32.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 55.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 52.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 48.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 47.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 46.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 46.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 45.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 45.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 45.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 42.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 41.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.2
FF:10158-103A5 76 years, female 43.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.2
Pig sample Sample description nTPM
Midbrain
nTPM: 17.6
Samples: 4

Max nTPM: 21.6
Min nTPM: 14.5
Sample A Female 19.2
Sample B Female 14.5
Sample C Male 21.6
Sample D Male 15.1
Periaqueductal gray
nTPM: 15.0
Samples: 3

Max nTPM: 15.7
Min nTPM: 14.3
Sample B Female 15.0
Sample C Male 15.7
Sample D Male 14.3
Substantia nigra
nTPM: 16.9
Samples: 4

Max nTPM: 18.6
Min nTPM: 15.3
Sample A Female 18.6
Sample B Female 15.3
Sample C Male 18.0
Sample D Male 15.5
Superior colliculi
nTPM: 18.2
Samples: 4

Max nTPM: 21.0
Min nTPM: 17.0
Sample A Female 17.3
Sample B Female 21.0
Sample C Male 17.6
Sample D Male 17.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.3
Samples: 4

Max nTPM: 7.8
Min nTPM: 4.1
Sample A Male 7.8
Sample B Male 4.1
Sample C Female 5.6
Sample D Female 7.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.8
532690 Antisense, RP_040825_01_E01, Mouse strain C57BL/6J (56 days, male) 14.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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