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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:36.0 nTPM
HPA:36.0 nTPM
GTEx:31.6 nTPM
FANTOM5:81.8 Scaled Tags Per Million
Pig:16.1 nTPM
Mouse:151.5 nTPM
Allen mouse:6.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001103
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.8
2481 Female, age 94, left hemisphere 37.6
2288 Male, age 75, left hemisphere 34.6
2846 Female, age 79, unknown 32.6
2290 Female, age 72, unknown 32.1
1854 Male, age 80, left hemisphere 31.6
1781 Male, age 74, unknown 31.5
1857 Female, age 85, left hemisphere 31.5
2289 Male, age 61, right hemisphere 30.8
Claustrum
nTPM: 32.8
1956 Male, age 74, unknown 34.5
2198 Male, age 80, both hemispheres 34.2
2196 Female, age 79, unknown 33.6
2491 Male, age 75, both hemispheres 33.6
2292 Female, age 85, both hemispheres 32.9
2392 Female, age 94, both hemispheres 32.4
2568 Male, age 61, both hemispheres 32.1
2284 Female, age 91, both hemispheres 32.0
2645 Female, age 72, unknown 29.8
Globus pallidus, externus
nTPM: 35.3
2772 Female, age 79, unknown 39.4
2395 Male, age 75, both hemispheres 37.6
1996 Male, age 80, right hemisphere 36.9
2646 Male, age 61, right hemisphere 32.1
2567 Female, age 72, unknown 30.3
Globus pallidus, internus
nTPM: 36.0
2287 Male, age 75, right hemisphere 39.9
2778 Female, age 91, both hemispheres 38.8
2483 Female, age 94, right hemisphere 36.9
1818 Male, age 74, unknown 36.2
2037 Male, age 80, right hemisphere 34.7
2111 Female, age 85, right hemisphere 33.6
2566 Female, age 72, unknown 32.2
Nucleus accumbens
nTPM: 33.6
2391 Female, age 94, left hemisphere 37.0
2286 Male, age 75, left hemisphere 36.3
1856 Female, age 91, right hemisphere 33.5
2698 Female, age 72, unknown 33.5
2824 Male, age 61, right hemisphere 33.0
1806 Female, age 85, left hemisphere 32.0
2732 Male, age 80, right hemisphere 31.8
1783 Male, age 74, unknown 31.5
Nucleus basalis of Meynert
nTPM: 31.9
2821 Male, age 75, both hemispheres 32.3
2484 Female, age 94, left hemisphere 32.2
2393 Male, age 80, right hemisphere 31.6
2569 Male, age 61, both hemispheres 31.4
Nucleus of the diagonal band
nTPM: 33.5
1812 Female, age 91, both hemispheres 35.3
2775 Male, age 80, right hemisphere 34.3
1979 Male, age 74, unknown 33.1
2029 Male, age 61, right hemisphere 32.6
2195 Female, age 85, both hemispheres 32.3
Olfactory tubercle
nTPM: 32.8
1998 Female, age 91, both hemispheres 34.4
1846 Male, age 80, right hemisphere 33.7
2856 Male, age 75, right hemisphere 31.7
2487 Female, age 94, left hemisphere 31.4
Putamen
nTPM: 32.3
2482 Female, age 94, left hemisphere 35.7
1937 Female, age 91, right hemisphere 33.5
2466 Female, age 79, unknown 33.0
1838 Male, age 80, right hemisphere 32.1
1829 Male, age 74, unknown 31.6
2647 Male, age 75, left hemisphere 30.7
2489 Female, age 72, unknown 29.5
Septal nuclei
nTPM: 32.7
2031 Female, age 72, unknown 34.5
2009 Female, age 91, both hemispheres 33.5
1960 Male, age 74, unknown 33.1
2629 Female, age 94, right hemisphere 33.0
2059 Female, age 85, both hemispheres 31.7
2199 Male, age 80, right hemisphere 31.6
2394 Male, age 61, left hemisphere 31.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.0
Samples: 246

Max nTPM: 45.7
Min nTPM: 21.2
Std nTPM: 3.8
Median nTPM: 30.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 45.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 40.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 40.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 38.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 38.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 38.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 37.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 37.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 37.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 36.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 36.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 30.7
Samples: 246

Max nTPM: 47.7
Min nTPM: 21.1
Std nTPM: 4.3
Median nTPM: 30.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 47.7
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 42.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 42.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 42.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 42.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 41.6
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 41.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 40.0
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 39.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 39.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 38.8
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Brain - Putamen (basal ganglia)
Average nTPM: 31.6
Samples: 205

Max nTPM: 52.6
Min nTPM: 21.0
Std nTPM: 4.9
Median nTPM: 30.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 52.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 47.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 46.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 46.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 43.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 43.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 42.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 42.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 39.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 39.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 39.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 56.9
FF:10164-103B2 76 years, female 56.9
Globus pallidus
Scaled Tags Per Million: 54.0
FF:10161-103A8 76 years, female 61.4
FF:10175-103C4 60 years, female 46.5
Nucleus accumbens
Scaled Tags Per Million: 81.8
FF:10037-101F1 23-56 years, mixed 81.8
Putamen
Scaled Tags Per Million: 62.8
FF:10176-103C5 60 years, female 62.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.1
Pig sample Sample description nTPM
Caudate
nTPM: 14.4
Samples: 4

Max nTPM: 15.6
Min nTPM: 12.6
Sample A Female 12.6
Sample B Female 15.6
Sample C Male 15.5
Sample D Male 13.7
Putamen
nTPM: 15.8
Samples: 4

Max nTPM: 19.9
Min nTPM: 13.1
Sample A Female 15.3
Sample B Female 13.1
Sample C Male 19.9
Sample D Male 14.7
Septum
nTPM: 16.1
Samples: 4

Max nTPM: 20.4
Min nTPM: 13.2
Sample A Female 15.6
Sample B Female 15.3
Sample C Male 20.4
Sample D Male 13.2
Ventral pallidum
nTPM: 16.0
Samples: 4

Max nTPM: 19.7
Min nTPM: 13.2
Sample A Female 13.2
Sample B Female 16.6
Sample C Male 19.7
Sample D Male 14.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 151.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 126.7
Samples: 4

Max nTPM: 130.9
Min nTPM: 119.9
Sample A Male 126.8
Sample B Male 130.9
Sample C Female 119.9
Sample D Female 129.0
Septum
nTPM: 151.5
Samples: 4

Max nTPM: 166.7
Min nTPM: 140.5
Sample A Male 140.5
Sample B Male 166.7
Sample C Female 156.6
Sample D Female 142.1
Ventral forebrain
nTPM: 122.6
Samples: 4

Max nTPM: 131.8
Min nTPM: 111.7
Sample A Male 111.7
Sample B Male 131.8
Sample C Female 130.8
Sample D Female 115.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.3
532578 Antisense, RP_040810_02_B12, Mouse strain C57BL/6J (56 days, male) 6.3
Pallidum
Expression energy: 6.8
532578 Antisense, RP_040810_02_B12, Mouse strain C57BL/6J (56 days, male) 6.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.