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SBF1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.1 nTPM
HPA:70.1 nTPM
GTEx:121.9 nTPM
FANTOM5:50.8 Scaled Tags Per Million
Pig:46.2 nTPM
Mouse:77.7 nTPM
Allen mouse:16.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 70.1
Sample id Sample description nTPM
Hippocampus
nTPM: 70.1
2621 Female, age 67, right hemisphere 84.9
2529 Female, age 94, left hemisphere 81.2
2148 Female, age 91, left hemisphere 71.9
1911 Female, age 85, right hemisphere 63.6
1855 Male, age 76, left hemisphere 60.5
1898 Male, age 80, left hemisphere 58.5
Dentate gyrus
nTPM: 63.4
2531 Female, age 67, both hemispheres 85.6
1927 Female, age 91, both hemispheres 75.1
2530 Female, age 94, left hemisphere 64.4
2528 Male, age 74, both hemispheres 57.5
2010 Male, age 76, both hemispheres 54.6
2246 Female, age 85, both hemispheres 43.4
Entorhinal gyrus
nTPM: 55.9
2613 Female, age 94, left hemisphere 74.7
2764 Male, age 80, right hemisphere 59.0
2686 Male, age 75, right hemisphere 55.9
2117 Female, age 91, right hemisphere 53.6
1938 Female, age 85, left hemisphere 48.1
1787 Male, age 76, left hemisphere 44.4
Hippocampus, CA1
nTPM: 63.9
2749 Male, age 80, left hemisphere 83.4
2527 Male, age 74, both hemispheres 72.2
2082 Female, age 91, right hemisphere 58.6
1873 Female, age 85, both hemispheres 56.2
2045 Male, age 76, both hemispheres 49.0
Hippocampus, CA2
nTPM: 63.2
1963 Male, age 80, left hemisphere 112.0
2113 Female, age 91, right hemisphere 66.0
2437 Female, age 94, left hemisphere 58.0
1892 Male, age 76, both hemispheres 52.9
2249 Male, age 74, both hemispheres 49.5
1940 Female, age 85, left hemisphere 40.9
Hippocampus, CA3
nTPM: 66.1
2861 Female, age 67, both hemispheres 89.5
2137 Male, age 80, left hemisphere 85.2
2620 Female, age 94, left hemisphere 77.0
1867 Male, age 76, both hemispheres 52.0
1891 Female, age 85, both hemispheres 47.3
2436 Male, age 74, both hemispheres 45.7
Parahippocampal cortex
nTPM: 50.0
2245 Female, age 91, both hemispheres 71.1
2018 Male, age 76, both hemispheres 61.6
2250 Female, age 67, right hemisphere 48.7
2622 Female, age 67, right hemisphere 48.7
2693 Female, age 94, both hemispheres 48.0
1933 Female, age 85, both hemispheres 47.9
2532 Female, age 72, left hemisphere 47.7
1990 Female, age 91, right hemisphere 43.5
1850 Male, age 80, both hemispheres 42.5
2692 Male, age 74, both hemispheres 39.8
Perirhinal gyrus
nTPM: 50.4
2521 Female, age 94, right hemisphere 67.4
1847 Female, age 91, left hemisphere 52.6
1794 Male, age 80, right hemisphere 51.2
2848 Male, age 76, right hemisphere 41.9
1841 Female, age 85, right hemisphere 39.1
Subiculum
nTPM: 47.5
2042 Male, age 76, both hemispheres 57.6
2729 Female, age 91, right hemisphere 52.1
1901 Male, age 80, both hemispheres 51.3
1977 Female, age 85, both hemispheres 48.3
2619 Male, age 74, both hemispheres 42.3
2438 Female, age 94, left hemisphere 33.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 121.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 121.9
Samples: 197

Max nTPM: 404.2
Min nTPM: 26.6
Std nTPM: 49.9
Median nTPM: 112.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 404.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 311.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 271.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 249.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 242.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 240.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 238.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 231.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 225.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 224.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 219.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 50.8
FF:10153-102I9 76 years, female 60.8
FF:10169-103B7 60 years, female 40.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 46.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 46.2
Samples: 4

Max nTPM: 60.4
Min nTPM: 34.7
Sample A Female 60.4
Sample B Female 48.4
Sample C Male 41.3
Sample D Male 34.7
Entorhinal cortex
nTPM: 39.5
Samples: 4

Max nTPM: 49.8
Min nTPM: 34.6
Sample A Female 38.9
Sample B Female 34.8
Sample C Male 49.8
Sample D Male 34.6
Subiculum
nTPM: 37.4
Samples: 4

Max nTPM: 50.2
Min nTPM: 29.3
Sample A Female 50.2
Sample B Female 34.2
Sample C Male 36.0
Sample D Male 29.3
Ventral hippocampus
nTPM: 43.7
Samples: 4

Max nTPM: 57.1
Min nTPM: 29.0
Sample A Female 37.6
Sample B Female 29.0
Sample C Male 51.0
Sample D Male 57.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 77.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 55.4
Samples: 4

Max nTPM: 58.1
Min nTPM: 50.6
Sample A Male 57.7
Sample B Male 50.6
Sample C Female 55.1
Sample D Female 58.1
Hippocampal formation
nTPM: 77.7
Samples: 4

Max nTPM: 97.4
Min nTPM: 64.0
Sample A Male 64.0
Sample B Male 77.1
Sample C Female 97.4
Sample D Female 72.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 16.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.0
227739 Antisense, RP_040609_01_C09, Mouse strain C57BL/6J (56 days, male) 16.0
276264 Antisense, RP_040609_01_C09, Mouse strain C57BL/6J (56 days, male) 8.6

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