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SBF1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.3 nTPM
HPA:57.3 nTPM
GTEx:58.3 nTPM
FANTOM5:60.5 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:57.2 nTPM
Allen mouse:9.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 57.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.0
1781 Male, age 74, unknown 38.3
2290 Female, age 72, unknown 32.7
2288 Male, age 75, left hemisphere 31.8
2289 Male, age 61, right hemisphere 29.6
2846 Female, age 79, unknown 29.2
1854 Male, age 80, left hemisphere 27.2
1857 Female, age 85, left hemisphere 24.9
2481 Female, age 94, left hemisphere 18.6
Claustrum
nTPM: 57.3
2645 Female, age 72, unknown 65.0
2491 Male, age 75, both hemispheres 63.4
2568 Male, age 61, both hemispheres 62.7
2198 Male, age 80, both hemispheres 62.6
2284 Female, age 91, both hemispheres 61.6
2292 Female, age 85, both hemispheres 60.1
1956 Male, age 74, unknown 53.6
2196 Female, age 79, unknown 44.3
2392 Female, age 94, both hemispheres 42.5
Globus pallidus, externus
nTPM: 40.6
2567 Female, age 72, unknown 54.7
2646 Male, age 61, right hemisphere 41.6
2772 Female, age 79, unknown 41.6
1996 Male, age 80, right hemisphere 32.6
2395 Male, age 75, both hemispheres 32.3
Globus pallidus, internus
nTPM: 37.6
2111 Female, age 85, right hemisphere 51.6
2566 Female, age 72, unknown 46.5
2778 Female, age 91, both hemispheres 40.4
2287 Male, age 75, right hemisphere 40.2
1818 Male, age 74, unknown 32.4
2037 Male, age 80, right hemisphere 27.4
2483 Female, age 94, right hemisphere 24.4
Nucleus accumbens
nTPM: 31.1
1783 Male, age 74, unknown 40.3
2824 Male, age 61, right hemisphere 38.9
2286 Male, age 75, left hemisphere 31.2
1806 Female, age 85, left hemisphere 29.5
2732 Male, age 80, right hemisphere 28.2
1856 Female, age 91, right hemisphere 27.6
2391 Female, age 94, left hemisphere 27.5
2698 Female, age 72, unknown 25.6
Nucleus basalis of Meynert
nTPM: 30.6
2569 Male, age 61, both hemispheres 41.1
2484 Female, age 94, left hemisphere 30.4
2821 Male, age 75, both hemispheres 28.3
2393 Male, age 80, right hemisphere 22.6
Nucleus of the diagonal band
nTPM: 43.5
2029 Male, age 61, right hemisphere 58.2
2775 Male, age 80, right hemisphere 49.8
2195 Female, age 85, both hemispheres 47.5
1812 Female, age 91, both hemispheres 37.5
1979 Male, age 74, unknown 24.2
Olfactory tubercle
nTPM: 48.5
2487 Female, age 94, left hemisphere 63.4
1998 Female, age 91, both hemispheres 49.4
2856 Male, age 75, right hemisphere 42.2
1846 Male, age 80, right hemisphere 38.9
Putamen
nTPM: 32.4
2647 Male, age 75, left hemisphere 45.2
2489 Female, age 72, unknown 34.7
2466 Female, age 79, unknown 32.0
1829 Male, age 74, unknown 31.9
1937 Female, age 91, right hemisphere 31.2
1838 Male, age 80, right hemisphere 27.7
2482 Female, age 94, left hemisphere 23.8
Septal nuclei
nTPM: 42.6
1960 Male, age 74, unknown 63.6
2059 Female, age 85, both hemispheres 50.2
2031 Female, age 72, unknown 47.4
2629 Female, age 94, right hemisphere 39.7
2394 Male, age 61, left hemisphere 39.2
2009 Female, age 91, both hemispheres 34.8
2199 Male, age 80, right hemisphere 23.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 58.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 51.1
Samples: 246

Max nTPM: 83.4
Min nTPM: 14.9
Std nTPM: 11.4
Median nTPM: 51.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 83.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 83.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 82.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 81.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 79.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 79.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 76.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 74.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 74.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 72.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 71.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 58.3
Samples: 246

Max nTPM: 99.6
Min nTPM: 22.0
Std nTPM: 13.0
Median nTPM: 58.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 99.6
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 95.1
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 94.8
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 94.0
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 84.4
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 83.7
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 82.9
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 82.8
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 82.7
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 81.8
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 81.7
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Brain - Putamen (basal ganglia)
Average nTPM: 56.1
Samples: 205

Max nTPM: 93.5
Min nTPM: 25.0
Std nTPM: 11.5
Median nTPM: 56.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 93.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 93.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 90.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 85.7
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 82.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 79.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 76.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 75.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 73.5
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 73.1
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 73.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 46.2
FF:10164-103B2 76 years, female 46.2
Globus pallidus
Scaled Tags Per Million: 49.4
FF:10161-103A8 76 years, female 64.1
FF:10175-103C4 60 years, female 34.7
Nucleus accumbens
Scaled Tags Per Million: 60.5
FF:10037-101F1 23-56 years, mixed 60.5
Putamen
Scaled Tags Per Million: 54.6
FF:10176-103C5 60 years, female 54.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 28.9
Pig sample Sample description nTPM
Caudate
nTPM: 23.9
Samples: 4

Max nTPM: 27.4
Min nTPM: 18.2
Sample A Female 18.2
Sample B Female 27.4
Sample C Male 26.8
Sample D Male 23.3
Putamen
nTPM: 27.1
Samples: 4

Max nTPM: 32.0
Min nTPM: 22.2
Sample A Female 28.7
Sample B Female 22.2
Sample C Male 25.5
Sample D Male 32.0
Septum
nTPM: 24.0
Samples: 4

Max nTPM: 30.8
Min nTPM: 20.7
Sample A Female 22.9
Sample B Female 21.6
Sample C Male 30.8
Sample D Male 20.7
Ventral pallidum
nTPM: 28.9
Samples: 4

Max nTPM: 45.5
Min nTPM: 18.4
Sample A Female 18.4
Sample B Female 23.7
Sample C Male 45.5
Sample D Male 28.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 57.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 51.6
Samples: 4

Max nTPM: 58.4
Min nTPM: 47.6
Sample A Male 47.6
Sample B Male 58.4
Sample C Female 51.4
Sample D Female 49.1
Septum
nTPM: 57.2
Samples: 4

Max nTPM: 59.5
Min nTPM: 54.5
Sample A Male 57.5
Sample B Male 54.5
Sample C Female 59.5
Sample D Female 57.3
Ventral forebrain
nTPM: 51.5
Samples: 4

Max nTPM: 55.0
Min nTPM: 46.9
Sample A Male 46.9
Sample B Male 52.8
Sample C Female 55.0
Sample D Female 51.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.8
227739 Antisense, RP_040609_01_C09, Mouse strain C57BL/6J (56 days, male) 8.8
276264 Antisense, RP_040609_01_C09, Mouse strain C57BL/6J (56 days, male) 5.6
Pallidum
Expression energy: 9.7
227739 Antisense, RP_040609_01_C09, Mouse strain C57BL/6J (56 days, male) 9.7
276264 Antisense, RP_040609_01_C09, Mouse strain C57BL/6J (56 days, male) 5.2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.