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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:46.3 nTPM
HPA:46.3 nTPM
GTEx:44.0 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:6.2 nTPM
Mouse:10.0 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB011232
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 46.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.0
2481 Female, age 94, left hemisphere 41.3
1781 Male, age 74, unknown 39.2
2289 Male, age 61, right hemisphere 39.1
1857 Female, age 85, left hemisphere 38.9
2290 Female, age 72, unknown 36.8
1854 Male, age 80, left hemisphere 36.7
2288 Male, age 75, left hemisphere 36.0
2846 Female, age 79, unknown 35.9
Claustrum
nTPM: 36.2
2292 Female, age 85, both hemispheres 40.5
2198 Male, age 80, both hemispheres 38.1
1956 Male, age 74, unknown 37.6
2196 Female, age 79, unknown 36.8
2491 Male, age 75, both hemispheres 36.8
2284 Female, age 91, both hemispheres 35.1
2392 Female, age 94, both hemispheres 34.9
2645 Female, age 72, unknown 34.7
2568 Male, age 61, both hemispheres 31.5
Globus pallidus, externus
nTPM: 46.3
2772 Female, age 79, unknown 52.0
1996 Male, age 80, right hemisphere 51.7
2395 Male, age 75, both hemispheres 45.8
2567 Female, age 72, unknown 41.4
2646 Male, age 61, right hemisphere 40.7
Globus pallidus, internus
nTPM: 45.7
2037 Male, age 80, right hemisphere 50.4
2111 Female, age 85, right hemisphere 49.6
2778 Female, age 91, both hemispheres 48.0
1818 Male, age 74, unknown 45.8
2483 Female, age 94, right hemisphere 42.9
2566 Female, age 72, unknown 41.9
2287 Male, age 75, right hemisphere 41.4
Nucleus accumbens
nTPM: 37.7
2732 Male, age 80, right hemisphere 44.5
2391 Female, age 94, left hemisphere 39.0
1806 Female, age 85, left hemisphere 38.5
2286 Male, age 75, left hemisphere 38.4
2698 Female, age 72, unknown 37.6
1783 Male, age 74, unknown 37.0
1856 Female, age 91, right hemisphere 34.8
2824 Male, age 61, right hemisphere 31.8
Nucleus basalis of Meynert
nTPM: 39.8
2569 Male, age 61, both hemispheres 42.1
2484 Female, age 94, left hemisphere 39.7
2821 Male, age 75, both hemispheres 39.4
2393 Male, age 80, right hemisphere 38.1
Nucleus of the diagonal band
nTPM: 35.6
1812 Female, age 91, both hemispheres 39.9
1979 Male, age 74, unknown 36.2
2775 Male, age 80, right hemisphere 35.0
2029 Male, age 61, right hemisphere 34.4
2195 Female, age 85, both hemispheres 32.6
Olfactory tubercle
nTPM: 34.7
2487 Female, age 94, left hemisphere 35.6
2856 Male, age 75, right hemisphere 35.2
1846 Male, age 80, right hemisphere 34.5
1998 Female, age 91, both hemispheres 33.5
Putamen
nTPM: 35.7
2482 Female, age 94, left hemisphere 41.2
2489 Female, age 72, unknown 37.1
1937 Female, age 91, right hemisphere 36.0
2466 Female, age 79, unknown 35.1
2647 Male, age 75, left hemisphere 34.5
1829 Male, age 74, unknown 34.4
1838 Male, age 80, right hemisphere 31.7
Septal nuclei
nTPM: 37.7
2394 Male, age 61, left hemisphere 41.6
2199 Male, age 80, right hemisphere 39.9
2059 Female, age 85, both hemispheres 39.7
2009 Female, age 91, both hemispheres 38.0
2031 Female, age 72, unknown 36.9
1960 Male, age 74, unknown 34.6
2629 Female, age 94, right hemisphere 33.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.2
Samples: 246

Max nTPM: 130.1
Min nTPM: 6.6
Std nTPM: 19.1
Median nTPM: 36.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 130.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 112.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 110.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 109.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 93.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 90.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 90.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 89.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 78.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 78.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 77.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.0
Samples: 246

Max nTPM: 148.3
Min nTPM: 12.2
Std nTPM: 22.8
Median nTPM: 34.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 148.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 143.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 124.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 116.6
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 112.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 95.8
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 94.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 92.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 91.6
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 90.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 90.0
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Brain - Putamen (basal ganglia)
Average nTPM: 44.0
Samples: 205

Max nTPM: 114.4
Min nTPM: 11.3
Std nTPM: 18.5
Median nTPM: 40.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 114.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 112.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 102.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 99.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 97.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 87.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 86.4
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 85.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 83.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 82.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 78.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.4
FF:10164-103B2 76 years, female 16.4
Globus pallidus
Scaled Tags Per Million: 24.1
FF:10161-103A8 76 years, female 30.8
FF:10175-103C4 60 years, female 17.3
Nucleus accumbens
Scaled Tags Per Million: 12.3
FF:10037-101F1 23-56 years, mixed 12.3
Putamen
Scaled Tags Per Million: 9.2
FF:10176-103C5 60 years, female 9.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.2
Pig sample Sample description nTPM
Caudate
nTPM: 4.8
Samples: 4

Max nTPM: 7.3
Min nTPM: 3.6
Sample A Female 4.3
Sample B Female 3.6
Sample C Male 7.3
Sample D Male 3.9
Putamen
nTPM: 3.5
Samples: 4

Max nTPM: 4.7
Min nTPM: 1.6
Sample A Female 3.4
Sample B Female 1.6
Sample C Male 4.7
Sample D Male 4.3
Septum
nTPM: 6.2
Samples: 4

Max nTPM: 9.8
Min nTPM: 2.8
Sample A Female 7.3
Sample B Female 2.8
Sample C Male 9.8
Sample D Male 4.9
Ventral pallidum
nTPM: 4.0
Samples: 4

Max nTPM: 5.9
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 3.3
Sample C Male 5.9
Sample D Male 3.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 8.3
Samples: 4

Max nTPM: 10.8
Min nTPM: 5.1
Sample A Male 8.8
Sample B Male 8.6
Sample C Female 5.1
Sample D Female 10.8
Septum
nTPM: 10.0
Samples: 4

Max nTPM: 13.4
Min nTPM: 7.4
Sample A Male 8.9
Sample B Male 10.3
Sample C Female 13.4
Sample D Female 7.4
Ventral forebrain
nTPM: 10.0
Samples: 4

Max nTPM: 16.3
Min nTPM: 6.7
Sample A Male 9.2
Sample B Male 7.9
Sample C Female 16.3
Sample D Female 6.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
2071 Antisense, RP_040420_01_B06, Mouse strain C57BL/6J (56 days, male) 0.2
79556668 Antisense, RP_071204_01_C01, Mouse strain C57BL/6J (56 days, male) 0.0
79632284 Antisense, RP_071204_01_C01, Mouse strain C57BL/6J (56 days, male) 0.0
2072 Antisense, RP_040420_01_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.2
2071 Antisense, RP_040420_01_B06, Mouse strain C57BL/6J (56 days, male) 0.3
2072 Antisense, RP_040420_01_B06, Mouse strain C57BL/6J (56 days, male) 0.1
79556668 Antisense, RP_071204_01_C01, Mouse strain C57BL/6J (56 days, male) 0.0
79632284 Antisense, RP_071204_01_C01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.