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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.8 nTPM
HPA:48.8 nTPM
GTEx:65.6 nTPM
FANTOM5:41.2 Scaled Tags Per Million
Pig:17.1 nTPM
Mouse:4.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.0
2828 Female, age 72, unknown 48.9
2411 Female, age 72, unknown 47.5
2019 Male, age 18, unknown 46.5
1870 Female, age 42, unknown 46.2
1830 Male, age 51, unknown 45.2
1833 Male, age 53, unknown 43.5
2666 Male, age 74, left hemisphere 43.0
1827 Male, age 72, unknown 41.8
2586 Male, age 75, left hemisphere 41.6
2219 Male, age 76, both hemispheres 35.6
Dorsal raphe nucleus
nTPM: 48.8
2298 Female, age 72, unknown 53.7
2016 Female, age 72, unknown 51.6
2750 Male, age 76, both hemispheres 48.2
2047 Male, age 72, unknown 45.2
1828 Male, age 53, unknown 45.0
Inferior colliculus
nTPM: 40.6
2097 Female, age 72, unknown 43.2
1890 Male, age 53, unknown 42.1
1848 Female, age 42, unknown 40.1
2849 Male, age 72, unknown 37.3
Median raphe nucleus
nTPM: 39.9
2220 Male, age 76, midline 39.9
Pedunculopontine tegmental nucleus
nTPM: 46.3
2338 Male, age 61, both hemispheres 55.8
2334 Male, age 80, both hemispheres 43.9
1921 Female, age 85, both hemispheres 39.3
Periaquaductal grey, anterior
nTPM: 42.4
1795 Male, age 51, unknown 43.4
2502 Female, age 75, unknown 42.6
1947 Male, age 18, unknown 41.1
Periaquaductal grey, dorsal
nTPM: 41.2
1831 Male, age 72, unknown 41.9
2850 Male, age 76, both hemispheres 41.5
2464 Female, age 72, unknown 41.3
1840 Male, age 53, unknown 40.0
Periaquaductal grey, lateral
nTPM: 44.7
2272 Male, age 74, both hemispheres 47.4
2140 Male, age 76, both hemispheres 43.4
2053 Male, age 18, unknown 43.2
Pretectal area
nTPM: 42.9
2316 Male, age 76, right hemisphere 49.0
2273 Male, age 74, both hemispheres 47.4
2224 Female, age 72, unknown 45.9
2007 Male, age 72, unknown 43.4
2825 Male, age 18, unknown 43.2
2407 Male, age 75, both hemispheres 41.7
1815 Male, age 53, unknown 41.3
1817 Female, age 42, unknown 41.2
1944 Female, age 72, unknown 40.9
2667 Female, age 75, unknown 39.4
1816 Male, age 51, unknown 38.8
Red nucleus
nTPM: 46.0
2769 Male, age 72, unknown 51.2
2785 Male, age 18, unknown 49.5
1904 Male, age 53, unknown 49.2
2503 Female, age 72, unknown 49.1
2227 Male, age 72, unknown 48.3
1865 Male, age 51, unknown 47.2
2823 Male, age 76, right hemisphere 46.6
1954 Female, age 42, unknown 44.2
1821 Female, age 72, unknown 43.8
2725 Female, age 75, unknown 42.5
2584 Male, age 75, left hemisphere 40.9
2588 Male, age 74, left hemisphere 39.0
Substantia nigra
nTPM: 42.3
2590 Female, age 75, unknown 50.5
2665 Male, age 74, both hemispheres 46.9
1851 Male, age 51, unknown 43.7
2699 Male, age 18, unknown 43.5
2583 Male, age 75, right hemisphere 43.2
1916 Female, age 42, unknown 41.7
1941 Male, age 53, unknown 40.2
1889 Female, age 72, unknown 39.7
2409 Female, age 72, unknown 37.5
2241 Male, age 72, unknown 36.4
Superior colliculus
nTPM: 43.3
1995 Male, age 72, unknown 52.1
1913 Female, age 42, unknown 48.9
2587 Male, age 74, left hemisphere 46.0
1796 Male, age 53, unknown 43.2
2668 Female, age 75, unknown 41.9
1839 Male, age 51, unknown 41.7
2087 Female, age 72, unknown 41.2
1895 Male, age 76, right hemisphere 40.2
2664 Male, age 75, both hemispheres 39.9
2261 Male, age 18, unknown 38.3
Ventral tegmental area
nTPM: 45.1
2021 Male, age 53, unknown 48.5
1915 Female, age 42, unknown 46.1
1942 Male, age 51, unknown 44.9
2223 Female, age 72, unknown 44.4
2410 Female, age 72, unknown 43.4
2218 Male, age 76, both hemispheres 43.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.6
Samples: 139

Max nTPM: 131.0
Min nTPM: 20.8
Std nTPM: 23.9
Median nTPM: 60.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 131.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 126.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 124.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 123.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 113.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 110.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 109.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 107.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 106.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 105.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 104.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.2
FF:10158-103A5 76 years, female 41.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.1
Pig sample Sample description nTPM
Midbrain
nTPM: 8.3
Samples: 4

Max nTPM: 20.1
Min nTPM: 3.0
Sample A Female 20.1
Sample B Female 5.7
Sample C Male 4.4
Sample D Male 3.0
Periaqueductal gray
nTPM: 7.6
Samples: 3

Max nTPM: 10.6
Min nTPM: 4.7
Sample B Female 4.7
Sample C Male 10.6
Sample D Male 7.5
Substantia nigra
nTPM: 10.3
Samples: 4

Max nTPM: 15.4
Min nTPM: 6.5
Sample A Female 11.5
Sample B Female 15.4
Sample C Male 6.5
Sample D Male 7.6
Superior colliculi
nTPM: 17.1
Samples: 4

Max nTPM: 42.5
Min nTPM: 6.0
Sample A Female 13.0
Sample B Female 42.5
Sample C Male 6.8
Sample D Male 6.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.4
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.1
Sample A Male 5.1
Sample B Male 3.1
Sample C Female 4.2
Sample D Female 5.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
2071 Antisense, RP_040420_01_B06, Mouse strain C57BL/6J (56 days, male) 0.3
2072 Antisense, RP_040420_01_B06, Mouse strain C57BL/6J (56 days, male) 0.2
79556668 Antisense, RP_071204_01_C01, Mouse strain C57BL/6J (56 days, male) 0.0
79632284 Antisense, RP_071204_01_C01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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