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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:145.3 nTPM
HPA:145.3 nTPM
GTEx:122.0 nTPM
FANTOM5:163.1 Scaled Tags Per Million
Pig:162.0 nTPM
Mouse:398.9 nTPM
Allen mouse:12.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 145.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 137.6
2828 Female, age 72, unknown 159.3
2586 Male, age 75, left hemisphere 157.0
2019 Male, age 18, unknown 143.0
2411 Female, age 72, unknown 141.2
1827 Male, age 72, unknown 138.2
2666 Male, age 74, left hemisphere 137.8
1870 Female, age 42, unknown 129.8
1833 Male, age 53, unknown 125.5
2219 Male, age 76, both hemispheres 124.3
1830 Male, age 51, unknown 119.7
Dorsal raphe nucleus
nTPM: 134.4
2298 Female, age 72, unknown 142.7
1828 Male, age 53, unknown 141.2
2047 Male, age 72, unknown 132.0
2750 Male, age 76, both hemispheres 130.2
2016 Female, age 72, unknown 125.7
Inferior colliculus
nTPM: 132.7
2097 Female, age 72, unknown 138.8
1890 Male, age 53, unknown 135.8
1848 Female, age 42, unknown 134.2
2849 Male, age 72, unknown 122.0
Median raphe nucleus
nTPM: 125.9
2220 Male, age 76, midline 125.9
Pedunculopontine tegmental nucleus
nTPM: 127.1
1921 Female, age 85, both hemispheres 133.4
2334 Male, age 80, both hemispheres 130.1
2338 Male, age 61, both hemispheres 118.0
Periaquaductal grey, anterior
nTPM: 141.2
1795 Male, age 51, unknown 146.1
2502 Female, age 75, unknown 140.4
1947 Male, age 18, unknown 137.1
Periaquaductal grey, dorsal
nTPM: 128.1
2850 Male, age 76, both hemispheres 129.8
2464 Female, age 72, unknown 128.0
1831 Male, age 72, unknown 127.9
1840 Male, age 53, unknown 126.8
Periaquaductal grey, lateral
nTPM: 123.7
2272 Male, age 74, both hemispheres 125.6
2053 Male, age 18, unknown 125.2
2140 Male, age 76, both hemispheres 120.4
Pretectal area
nTPM: 145.3
1816 Male, age 51, unknown 165.6
1944 Female, age 72, unknown 161.5
1817 Female, age 42, unknown 160.7
2007 Male, age 72, unknown 160.7
2667 Female, age 75, unknown 158.8
1815 Male, age 53, unknown 149.6
2273 Male, age 74, both hemispheres 135.4
2224 Female, age 72, unknown 131.1
2407 Male, age 75, both hemispheres 128.9
2316 Male, age 76, right hemisphere 123.7
2825 Male, age 18, unknown 122.6
Red nucleus
nTPM: 129.9
2785 Male, age 18, unknown 141.8
1821 Female, age 72, unknown 139.4
2503 Female, age 72, unknown 135.5
2823 Male, age 76, right hemisphere 134.5
2725 Female, age 75, unknown 133.6
2769 Male, age 72, unknown 131.8
2227 Male, age 72, unknown 129.8
1954 Female, age 42, unknown 128.1
1865 Male, age 51, unknown 127.5
1904 Male, age 53, unknown 124.4
2588 Male, age 74, left hemisphere 117.5
2584 Male, age 75, left hemisphere 114.5
Substantia nigra
nTPM: 135.5
1916 Female, age 42, unknown 164.3
1889 Female, age 72, unknown 156.7
1851 Male, age 51, unknown 150.4
1941 Male, age 53, unknown 144.3
2699 Male, age 18, unknown 136.5
2241 Male, age 72, unknown 134.2
2409 Female, age 72, unknown 126.6
2665 Male, age 74, both hemispheres 119.4
2590 Female, age 75, unknown 114.9
2583 Male, age 75, right hemisphere 107.9
Superior colliculus
nTPM: 140.9
2087 Female, age 72, unknown 162.3
1796 Male, age 53, unknown 147.3
2668 Female, age 75, unknown 147.0
2587 Male, age 74, left hemisphere 142.6
2261 Male, age 18, unknown 142.0
2664 Male, age 75, both hemispheres 139.7
1995 Male, age 72, unknown 134.4
1913 Female, age 42, unknown 133.5
1895 Male, age 76, right hemisphere 130.0
1839 Male, age 51, unknown 129.9
Ventral tegmental area
nTPM: 137.1
1915 Female, age 42, unknown 148.0
2410 Female, age 72, unknown 145.1
2218 Male, age 76, both hemispheres 142.0
2223 Female, age 72, unknown 132.8
1942 Male, age 51, unknown 130.7
2021 Male, age 53, unknown 123.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 122.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 122.0
Samples: 139

Max nTPM: 266.3
Min nTPM: 40.0
Std nTPM: 35.7
Median nTPM: 120.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 266.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 238.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 216.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 202.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 198.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 196.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 192.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 191.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 189.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 176.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 174.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 163.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 163.1
FF:10158-103A5 76 years, female 163.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 162.0
Pig sample Sample description nTPM
Midbrain
nTPM: 142.5
Samples: 4

Max nTPM: 186.9
Min nTPM: 126.1
Sample A Female 126.1
Sample B Female 129.5
Sample C Male 186.9
Sample D Male 127.3
Periaqueductal gray
nTPM: 101.1
Samples: 3

Max nTPM: 120.3
Min nTPM: 80.0
Sample B Female 120.3
Sample C Male 102.9
Sample D Male 80.0
Substantia nigra
nTPM: 123.6
Samples: 4

Max nTPM: 146.8
Min nTPM: 104.6
Sample A Female 146.8
Sample B Female 104.6
Sample C Male 133.9
Sample D Male 108.9
Superior colliculi
nTPM: 161.9
Samples: 4

Max nTPM: 204.5
Min nTPM: 136.6
Sample A Female 163.6
Sample B Female 136.6
Sample C Male 204.5
Sample D Male 143.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 398.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 398.9
Samples: 4

Max nTPM: 416.0
Min nTPM: 376.9
Sample A Male 408.0
Sample B Male 376.9
Sample C Female 394.8
Sample D Female 416.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.6
67978674 Antisense, RP_040923_01_E08, Mouse strain C57BL/6J (56 days, male) 12.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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