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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.7 nTPM
HPA:28.7 nTPM
GTEx:28.8 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:17.5 nTPM
Mouse:32.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.4
2586 Male, age 75, left hemisphere 29.6
1870 Female, age 42, unknown 28.3
1833 Male, age 53, unknown 27.5
2019 Male, age 18, unknown 27.3
1830 Male, age 51, unknown 26.9
1827 Male, age 72, unknown 26.7
2828 Female, age 72, unknown 26.1
2411 Female, age 72, unknown 24.4
2219 Male, age 76, both hemispheres 23.7
2666 Male, age 74, left hemisphere 23.0
Dorsal raphe nucleus
nTPM: 26.3
2750 Male, age 76, both hemispheres 28.0
2298 Female, age 72, unknown 26.9
1828 Male, age 53, unknown 26.7
2016 Female, age 72, unknown 25.0
2047 Male, age 72, unknown 24.9
Inferior colliculus
nTPM: 25.1
1848 Female, age 42, unknown 26.2
1890 Male, age 53, unknown 25.4
2849 Male, age 72, unknown 24.6
2097 Female, age 72, unknown 24.1
Median raphe nucleus
nTPM: 26.5
2220 Male, age 76, midline 26.5
Pedunculopontine tegmental nucleus
nTPM: 27.2
2334 Male, age 80, both hemispheres 27.7
2338 Male, age 61, both hemispheres 27.6
1921 Female, age 85, both hemispheres 26.2
Periaquaductal grey, anterior
nTPM: 25.9
2502 Female, age 75, unknown 27.1
1947 Male, age 18, unknown 25.7
1795 Male, age 51, unknown 24.8
Periaquaductal grey, dorsal
nTPM: 24.0
2850 Male, age 76, both hemispheres 25.7
2464 Female, age 72, unknown 24.4
1831 Male, age 72, unknown 23.4
1840 Male, age 53, unknown 22.4
Periaquaductal grey, lateral
nTPM: 24.5
2053 Male, age 18, unknown 25.2
2140 Male, age 76, both hemispheres 24.2
2272 Male, age 74, both hemispheres 24.2
Pretectal area
nTPM: 25.6
1815 Male, age 53, unknown 28.7
1817 Female, age 42, unknown 27.9
1944 Female, age 72, unknown 26.0
2667 Female, age 75, unknown 26.0
2007 Male, age 72, unknown 25.9
2273 Male, age 74, both hemispheres 25.3
1816 Male, age 51, unknown 25.1
2224 Female, age 72, unknown 25.0
2316 Male, age 76, right hemisphere 24.3
2825 Male, age 18, unknown 24.2
2407 Male, age 75, both hemispheres 23.8
Red nucleus
nTPM: 28.7
1821 Female, age 72, unknown 31.2
2588 Male, age 74, left hemisphere 30.9
1904 Male, age 53, unknown 29.7
2503 Female, age 72, unknown 29.6
1865 Male, age 51, unknown 29.3
1954 Female, age 42, unknown 28.9
2823 Male, age 76, right hemisphere 28.9
2769 Male, age 72, unknown 28.1
2725 Female, age 75, unknown 27.9
2227 Male, age 72, unknown 27.6
2785 Male, age 18, unknown 26.2
2584 Male, age 75, left hemisphere 25.7
Substantia nigra
nTPM: 26.8
2409 Female, age 72, unknown 28.5
1851 Male, age 51, unknown 28.3
1916 Female, age 42, unknown 28.2
2699 Male, age 18, unknown 28.2
1889 Female, age 72, unknown 27.9
2241 Male, age 72, unknown 26.9
2583 Male, age 75, right hemisphere 26.7
2590 Female, age 75, unknown 25.7
1941 Male, age 53, unknown 24.7
2665 Male, age 74, both hemispheres 23.3
Superior colliculus
nTPM: 26.1
1913 Female, age 42, unknown 28.5
1995 Male, age 72, unknown 28.2
2587 Male, age 74, left hemisphere 27.1
2261 Male, age 18, unknown 26.2
1839 Male, age 51, unknown 26.1
1796 Male, age 53, unknown 25.8
1895 Male, age 76, right hemisphere 25.7
2668 Female, age 75, unknown 25.4
2087 Female, age 72, unknown 25.1
2664 Male, age 75, both hemispheres 22.8
Ventral tegmental area
nTPM: 27.0
2410 Female, age 72, unknown 29.2
2223 Female, age 72, unknown 28.4
2218 Male, age 76, both hemispheres 27.4
2021 Male, age 53, unknown 25.7
1915 Female, age 42, unknown 25.6
1942 Male, age 51, unknown 25.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.8
Samples: 139

Max nTPM: 59.1
Min nTPM: 7.9
Std nTPM: 8.9
Median nTPM: 27.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 59.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 52.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 51.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 50.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 49.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 49.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 47.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 46.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 45.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 44.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 43.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.5
Pig sample Sample description nTPM
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 22.9
Min nTPM: 14.5
Sample A Female 22.9
Sample B Female 17.5
Sample C Male 15.0
Sample D Male 14.5
Periaqueductal gray
nTPM: 12.9
Samples: 3

Max nTPM: 13.5
Min nTPM: 11.8
Sample B Female 13.4
Sample C Male 13.5
Sample D Male 11.8
Substantia nigra
nTPM: 15.0
Samples: 4

Max nTPM: 18.0
Min nTPM: 14.0
Sample A Female 18.0
Sample B Female 14.0
Sample C Male 14.0
Sample D Male 14.0
Superior colliculi
nTPM: 15.7
Samples: 4

Max nTPM: 19.4
Min nTPM: 13.2
Sample A Female 19.4
Sample B Female 13.5
Sample C Male 13.2
Sample D Male 16.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.0
Samples: 4

Max nTPM: 36.1
Min nTPM: 29.3
Sample A Male 32.7
Sample B Male 30.0
Sample C Female 29.3
Sample D Female 36.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
583875 Antisense, RP_040831_01_D03, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.