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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:46.6 nTPM
HPA:46.6 nTPM
GTEx:43.1 nTPM
FANTOM5:139.8 Scaled Tags Per Million
Pig:34.4 nTPM
Mouse:19.8 nTPM
Allen mouse:9.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001378
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 46.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.7
2481 Female, age 94, left hemisphere 40.9
2846 Female, age 79, unknown 40.9
2288 Male, age 75, left hemisphere 39.5
2290 Female, age 72, unknown 39.4
2289 Male, age 61, right hemisphere 38.2
1781 Male, age 74, unknown 37.1
1857 Female, age 85, left hemisphere 37.0
1854 Male, age 80, left hemisphere 36.8
Claustrum
nTPM: 41.9
2292 Female, age 85, both hemispheres 48.9
1956 Male, age 74, unknown 43.8
2196 Female, age 79, unknown 43.3
2491 Male, age 75, both hemispheres 41.3
2198 Male, age 80, both hemispheres 40.8
2645 Female, age 72, unknown 40.4
2568 Male, age 61, both hemispheres 39.8
2392 Female, age 94, both hemispheres 39.6
2284 Female, age 91, both hemispheres 39.2
Globus pallidus, externus
nTPM: 46.1
2567 Female, age 72, unknown 55.4
2646 Male, age 61, right hemisphere 51.3
2395 Male, age 75, both hemispheres 43.1
1996 Male, age 80, right hemisphere 42.2
2772 Female, age 79, unknown 38.4
Globus pallidus, internus
nTPM: 46.6
2566 Female, age 72, unknown 52.7
2483 Female, age 94, right hemisphere 48.4
2111 Female, age 85, right hemisphere 47.6
2287 Male, age 75, right hemisphere 45.9
1818 Male, age 74, unknown 44.3
2778 Female, age 91, both hemispheres 44.3
2037 Male, age 80, right hemisphere 42.9
Nucleus accumbens
nTPM: 38.3
2698 Female, age 72, unknown 42.8
2391 Female, age 94, left hemisphere 42.6
2732 Male, age 80, right hemisphere 39.7
2286 Male, age 75, left hemisphere 38.2
1806 Female, age 85, left hemisphere 36.4
1856 Female, age 91, right hemisphere 35.9
1783 Male, age 74, unknown 35.7
2824 Male, age 61, right hemisphere 34.9
Nucleus basalis of Meynert
nTPM: 43.7
2569 Male, age 61, both hemispheres 49.2
2821 Male, age 75, both hemispheres 45.4
2484 Female, age 94, left hemisphere 41.1
2393 Male, age 80, right hemisphere 39.1
Nucleus of the diagonal band
nTPM: 37.1
1979 Male, age 74, unknown 40.8
2195 Female, age 85, both hemispheres 39.6
1812 Female, age 91, both hemispheres 36.6
2775 Male, age 80, right hemisphere 36.0
2029 Male, age 61, right hemisphere 32.5
Olfactory tubercle
nTPM: 37.1
2856 Male, age 75, right hemisphere 39.1
1846 Male, age 80, right hemisphere 37.8
2487 Female, age 94, left hemisphere 36.6
1998 Female, age 91, both hemispheres 35.0
Putamen
nTPM: 40.9
2489 Female, age 72, unknown 48.0
2647 Male, age 75, left hemisphere 46.2
2482 Female, age 94, left hemisphere 43.1
1829 Male, age 74, unknown 40.9
2466 Female, age 79, unknown 37.2
1838 Male, age 80, right hemisphere 35.7
1937 Female, age 91, right hemisphere 35.3
Septal nuclei
nTPM: 38.0
2199 Male, age 80, right hemisphere 42.4
2629 Female, age 94, right hemisphere 40.7
2059 Female, age 85, both hemispheres 38.8
1960 Male, age 74, unknown 37.5
2394 Male, age 61, left hemisphere 37.5
2009 Female, age 91, both hemispheres 36.1
2031 Female, age 72, unknown 33.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.9
Samples: 246

Max nTPM: 68.2
Min nTPM: 15.5
Std nTPM: 7.8
Median nTPM: 41.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 68.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 66.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 61.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 59.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 56.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 56.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 56.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 55.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 54.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 54.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 53.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.1
Samples: 246

Max nTPM: 70.2
Min nTPM: 18.0
Std nTPM: 7.5
Median nTPM: 40.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 70.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 66.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 62.8
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 60.4
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 58.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 58.3
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 56.9
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 55.3
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 55.2
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 53.8
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 53.2
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Brain - Putamen (basal ganglia)
Average nTPM: 43.1
Samples: 205

Max nTPM: 73.6
Min nTPM: 20.9
Std nTPM: 8.2
Median nTPM: 41.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 73.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 68.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 65.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 64.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 62.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 62.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 60.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 59.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 59.2
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 58.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 58.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 109.7
FF:10164-103B2 76 years, female 109.7
Globus pallidus
Scaled Tags Per Million: 139.8
FF:10161-103A8 76 years, female 192.7
FF:10175-103C4 60 years, female 86.8
Nucleus accumbens
Scaled Tags Per Million: 68.8
FF:10037-101F1 23-56 years, mixed 68.8
Putamen
Scaled Tags Per Million: 122.3
FF:10176-103C5 60 years, female 122.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 34.4
Pig sample Sample description nTPM
Caudate
nTPM: 31.6
Samples: 4

Max nTPM: 34.4
Min nTPM: 29.9
Sample A Female 31.7
Sample B Female 29.9
Sample C Male 34.4
Sample D Male 30.4
Putamen
nTPM: 33.4
Samples: 4

Max nTPM: 34.1
Min nTPM: 31.7
Sample A Female 34.1
Sample B Female 33.8
Sample C Male 31.7
Sample D Male 34.0
Septum
nTPM: 33.6
Samples: 4

Max nTPM: 37.5
Min nTPM: 31.2
Sample A Female 31.2
Sample B Female 32.8
Sample C Male 32.8
Sample D Male 37.5
Ventral pallidum
nTPM: 34.4
Samples: 4

Max nTPM: 38.3
Min nTPM: 31.6
Sample A Female 35.0
Sample B Female 31.6
Sample C Male 32.8
Sample D Male 38.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.8
Samples: 4

Max nTPM: 21.5
Min nTPM: 16.7
Sample A Male 21.0
Sample B Male 19.9
Sample C Female 21.5
Sample D Female 16.7
Septum
nTPM: 16.8
Samples: 4

Max nTPM: 17.4
Min nTPM: 15.9
Sample A Male 15.9
Sample B Male 16.5
Sample C Female 17.2
Sample D Female 17.4
Ventral forebrain
nTPM: 17.1
Samples: 4

Max nTPM: 18.8
Min nTPM: 15.0
Sample A Male 18.8
Sample B Male 17.2
Sample C Female 15.0
Sample D Female 17.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.6
69816386 Antisense, RP_050505_04_H09, Mouse strain C57BL/6J (56 days, male) 10.9
70919603 Antisense, RP_050713_01_F09, Mouse strain C57BL/6J (56 days, male) 8.4
Pallidum
Expression energy: 7.7
69816386 Antisense, RP_050505_04_H09, Mouse strain C57BL/6J (56 days, male) 8.5
70919603 Antisense, RP_050713_01_F09, Mouse strain C57BL/6J (56 days, male) 7.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.