ABOUTMENU
HELP
NEWS
TRPC4AP
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:49.5 nTPM
HPA:49.5 nTPM
GTEx:35.1 nTPM
FANTOM5:150.7 Scaled Tags Per Million
Pig:37.3 nTPM
Mouse:100.7 nTPM
Allen mouse:11.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA051197
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 49.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.0
1781 Male, age 74, unknown 37.0
2288 Male, age 75, left hemisphere 36.8
2481 Female, age 94, left hemisphere 36.7
1854 Male, age 80, left hemisphere 35.8
2846 Female, age 79, unknown 34.8
2289 Male, age 61, right hemisphere 34.0
2290 Female, age 72, unknown 32.8
1857 Female, age 85, left hemisphere 32.3
Claustrum
nTPM: 43.6
2292 Female, age 85, both hemispheres 50.1
1956 Male, age 74, unknown 45.3
2198 Male, age 80, both hemispheres 44.1
2491 Male, age 75, both hemispheres 43.4
2568 Male, age 61, both hemispheres 43.2
2392 Female, age 94, both hemispheres 42.8
2284 Female, age 91, both hemispheres 41.9
2645 Female, age 72, unknown 40.9
2196 Female, age 79, unknown 40.5
Globus pallidus, externus
nTPM: 48.9
2567 Female, age 72, unknown 56.1
2772 Female, age 79, unknown 50.3
2395 Male, age 75, both hemispheres 49.6
1996 Male, age 80, right hemisphere 44.5
2646 Male, age 61, right hemisphere 43.9
Globus pallidus, internus
nTPM: 49.5
2111 Female, age 85, right hemisphere 57.7
2566 Female, age 72, unknown 54.4
2778 Female, age 91, both hemispheres 53.3
1818 Male, age 74, unknown 48.0
2037 Male, age 80, right hemisphere 46.1
2287 Male, age 75, right hemisphere 44.4
2483 Female, age 94, right hemisphere 42.6
Nucleus accumbens
nTPM: 38.1
2391 Female, age 94, left hemisphere 42.7
2732 Male, age 80, right hemisphere 42.1
2698 Female, age 72, unknown 37.9
2286 Male, age 75, left hemisphere 37.5
1783 Male, age 74, unknown 37.1
2824 Male, age 61, right hemisphere 36.1
1806 Female, age 85, left hemisphere 36.0
1856 Female, age 91, right hemisphere 35.6
Nucleus basalis of Meynert
nTPM: 39.1
2569 Male, age 61, both hemispheres 41.4
2821 Male, age 75, both hemispheres 40.5
2393 Male, age 80, right hemisphere 37.3
2484 Female, age 94, left hemisphere 37.3
Nucleus of the diagonal band
nTPM: 37.7
2029 Male, age 61, right hemisphere 40.2
2775 Male, age 80, right hemisphere 39.6
1812 Female, age 91, both hemispheres 38.1
2195 Female, age 85, both hemispheres 35.9
1979 Male, age 74, unknown 34.5
Olfactory tubercle
nTPM: 38.4
1998 Female, age 91, both hemispheres 40.8
2487 Female, age 94, left hemisphere 40.4
1846 Male, age 80, right hemisphere 37.6
2856 Male, age 75, right hemisphere 34.8
Putamen
nTPM: 37.8
2647 Male, age 75, left hemisphere 40.5
2482 Female, age 94, left hemisphere 39.2
2489 Female, age 72, unknown 38.7
1937 Female, age 91, right hemisphere 38.5
1829 Male, age 74, unknown 37.3
2466 Female, age 79, unknown 36.7
1838 Male, age 80, right hemisphere 33.9
Septal nuclei
nTPM: 38.2
2394 Male, age 61, left hemisphere 42.2
2031 Female, age 72, unknown 38.6
1960 Male, age 74, unknown 38.3
2059 Female, age 85, both hemispheres 37.4
2199 Male, age 80, right hemisphere 37.2
2009 Female, age 91, both hemispheres 37.0
2629 Female, age 94, right hemisphere 37.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 35.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 31.9
Samples: 246

Max nTPM: 45.8
Min nTPM: 23.1
Std nTPM: 4.1
Median nTPM: 31.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 45.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 44.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 43.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 42.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 42.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 41.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 39.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 39.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 39.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 39.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 39.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.2
Samples: 246

Max nTPM: 55.4
Min nTPM: 23.8
Std nTPM: 4.5
Median nTPM: 32.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 55.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 50.3
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 47.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 46.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 46.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 45.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 43.3
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 43.1
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 43.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 42.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 42.6
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 35.1
Samples: 205

Max nTPM: 57.8
Min nTPM: 24.0
Std nTPM: 5.6
Median nTPM: 34.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 57.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 56.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 53.6
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 51.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 51.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 50.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 48.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 46.5
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 45.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 44.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 44.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 150.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 94.1
FF:10164-103B2 76 years, female 94.1
Globus pallidus
Scaled Tags Per Million: 150.7
FF:10175-103C4 60 years, female 164.9
FF:10161-103A8 76 years, female 136.5
Nucleus accumbens
Scaled Tags Per Million: 123.0
FF:10037-101F1 23-56 years, mixed 123.0
Putamen
Scaled Tags Per Million: 92.8
FF:10176-103C5 60 years, female 92.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.3
Pig sample Sample description nTPM
Caudate
nTPM: 29.1
Samples: 4

Max nTPM: 31.2
Min nTPM: 26.5
Sample A Female 26.5
Sample B Female 31.0
Sample C Male 31.2
Sample D Male 27.7
Putamen
nTPM: 37.3
Samples: 4

Max nTPM: 45.9
Min nTPM: 27.9
Sample A Female 45.9
Sample B Female 27.9
Sample C Male 37.9
Sample D Male 37.5
Septum
nTPM: 36.7
Samples: 4

Max nTPM: 48.4
Min nTPM: 31.0
Sample A Female 35.9
Sample B Female 31.0
Sample C Male 48.4
Sample D Male 31.6
Ventral pallidum
nTPM: 37.2
Samples: 4

Max nTPM: 49.7
Min nTPM: 27.9
Sample A Female 27.9
Sample B Female 34.2
Sample C Male 49.7
Sample D Male 37.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 100.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 98.2
Samples: 4

Max nTPM: 100.7
Min nTPM: 93.0
Sample A Male 100.7
Sample B Male 100.0
Sample C Female 93.0
Sample D Female 99.0
Septum
nTPM: 100.7
Samples: 4

Max nTPM: 103.5
Min nTPM: 97.5
Sample A Male 100.6
Sample B Male 97.5
Sample C Female 101.2
Sample D Female 103.5
Ventral forebrain
nTPM: 95.6
Samples: 4

Max nTPM: 96.9
Min nTPM: 92.9
Sample A Male 92.9
Sample B Male 96.2
Sample C Female 96.9
Sample D Female 96.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.6
68633261 Antisense, RP_050125_02_F01, Mouse strain C57BL/6J (56 days, male) 11.6
Pallidum
Expression energy: 11.2
68633261 Antisense, RP_050125_02_F01, Mouse strain C57BL/6J (56 days, male) 11.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.