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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.4 nTPM
HPA:46.4 nTPM
GTEx:41.2 nTPM
FANTOM5:147.3 Scaled Tags Per Million
Pig:54.0 nTPM
Mouse:106.8 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.9
2411 Female, age 72, unknown 50.3
2019 Male, age 18, unknown 47.3
1827 Male, age 72, unknown 45.1
2666 Male, age 74, left hemisphere 45.0
2828 Female, age 72, unknown 44.5
2586 Male, age 75, left hemisphere 44.0
1830 Male, age 51, unknown 43.9
1833 Male, age 53, unknown 43.8
1870 Female, age 42, unknown 43.8
2219 Male, age 76, both hemispheres 40.8
Dorsal raphe nucleus
nTPM: 42.5
2750 Male, age 76, both hemispheres 47.9
2047 Male, age 72, unknown 43.0
1828 Male, age 53, unknown 41.6
2298 Female, age 72, unknown 41.4
2016 Female, age 72, unknown 38.6
Inferior colliculus
nTPM: 38.5
1890 Male, age 53, unknown 39.1
1848 Female, age 42, unknown 38.9
2097 Female, age 72, unknown 38.5
2849 Male, age 72, unknown 37.7
Median raphe nucleus
nTPM: 43.0
2220 Male, age 76, midline 43.0
Pedunculopontine tegmental nucleus
nTPM: 44.8
2338 Male, age 61, both hemispheres 47.6
2334 Male, age 80, both hemispheres 44.4
1921 Female, age 85, both hemispheres 42.5
Periaquaductal grey, anterior
nTPM: 41.5
1947 Male, age 18, unknown 44.4
1795 Male, age 51, unknown 40.4
2502 Female, age 75, unknown 39.7
Periaquaductal grey, dorsal
nTPM: 38.2
2464 Female, age 72, unknown 41.8
1840 Male, age 53, unknown 38.4
1831 Male, age 72, unknown 38.2
2850 Male, age 76, both hemispheres 34.6
Periaquaductal grey, lateral
nTPM: 39.0
2272 Male, age 74, both hemispheres 40.8
2053 Male, age 18, unknown 40.3
2140 Male, age 76, both hemispheres 36.1
Pretectal area
nTPM: 43.9
2007 Male, age 72, unknown 49.2
1815 Male, age 53, unknown 47.0
1817 Female, age 42, unknown 46.6
1816 Male, age 51, unknown 46.0
1944 Female, age 72, unknown 44.7
2316 Male, age 76, right hemisphere 43.6
2407 Male, age 75, both hemispheres 43.6
2667 Female, age 75, unknown 43.0
2825 Male, age 18, unknown 40.7
2224 Female, age 72, unknown 39.3
2273 Male, age 74, both hemispheres 38.9
Red nucleus
nTPM: 46.0
2823 Male, age 76, right hemisphere 50.0
2503 Female, age 72, unknown 47.7
1904 Male, age 53, unknown 47.4
2588 Male, age 74, left hemisphere 47.2
2785 Male, age 18, unknown 47.0
1865 Male, age 51, unknown 46.9
1821 Female, age 72, unknown 46.8
2584 Male, age 75, left hemisphere 45.7
2769 Male, age 72, unknown 44.8
1954 Female, age 42, unknown 44.4
2227 Male, age 72, unknown 43.8
2725 Female, age 75, unknown 40.3
Substantia nigra
nTPM: 46.4
1851 Male, age 51, unknown 49.6
1916 Female, age 42, unknown 49.5
2409 Female, age 72, unknown 48.5
2590 Female, age 75, unknown 48.1
2583 Male, age 75, right hemisphere 47.3
1941 Male, age 53, unknown 45.6
2241 Male, age 72, unknown 45.6
1889 Female, age 72, unknown 45.2
2665 Male, age 74, both hemispheres 42.2
2699 Male, age 18, unknown 41.9
Superior colliculus
nTPM: 43.6
2668 Female, age 75, unknown 50.9
1913 Female, age 42, unknown 46.3
1895 Male, age 76, right hemisphere 44.9
2087 Female, age 72, unknown 43.6
2261 Male, age 18, unknown 42.9
1796 Male, age 53, unknown 42.3
1995 Male, age 72, unknown 42.1
2587 Male, age 74, left hemisphere 41.7
1839 Male, age 51, unknown 40.8
2664 Male, age 75, both hemispheres 39.9
Ventral tegmental area
nTPM: 44.4
2410 Female, age 72, unknown 51.0
1915 Female, age 42, unknown 46.0
2218 Male, age 76, both hemispheres 43.4
1942 Male, age 51, unknown 42.9
2021 Male, age 53, unknown 42.3
2223 Female, age 72, unknown 40.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.2
Samples: 139

Max nTPM: 62.8
Min nTPM: 25.2
Std nTPM: 7.6
Median nTPM: 40.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 62.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 60.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 59.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 58.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 58.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 58.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 54.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 54.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 54.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 53.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 52.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 147.3
FF:10158-103A5 76 years, female 147.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.0
Pig sample Sample description nTPM
Midbrain
nTPM: 54.0
Samples: 4

Max nTPM: 77.1
Min nTPM: 39.9
Sample A Female 77.1
Sample B Female 48.1
Sample C Male 51.0
Sample D Male 39.9
Periaqueductal gray
nTPM: 40.1
Samples: 3

Max nTPM: 43.0
Min nTPM: 36.0
Sample B Female 41.3
Sample C Male 43.0
Sample D Male 36.0
Substantia nigra
nTPM: 52.7
Samples: 4

Max nTPM: 65.8
Min nTPM: 42.6
Sample A Female 65.8
Sample B Female 42.6
Sample C Male 52.4
Sample D Male 50.0
Superior colliculi
nTPM: 47.6
Samples: 4

Max nTPM: 53.1
Min nTPM: 37.4
Sample A Female 53.1
Sample B Female 37.4
Sample C Male 51.8
Sample D Male 48.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 106.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 106.9
Samples: 4

Max nTPM: 110.1
Min nTPM: 102.7
Sample A Male 102.7
Sample B Male 105.2
Sample C Female 109.4
Sample D Female 110.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
68633261 Antisense, RP_050125_02_F01, Mouse strain C57BL/6J (56 days, male) 12.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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