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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.2 nTPM
HPA:23.2 nTPM
GTEx:17.5 nTPM
FANTOM5:51.4 Scaled Tags Per Million
Pig:26.0 nTPM
Mouse:68.7 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 23.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.4
2288 Male, age 75, left hemisphere 23.0
2846 Female, age 79, unknown 17.9
1781 Male, age 74, unknown 17.2
2290 Female, age 72, unknown 13.6
1854 Male, age 80, left hemisphere 13.3
2289 Male, age 61, right hemisphere 13.0
1857 Female, age 85, left hemisphere 12.7
2481 Female, age 94, left hemisphere 12.2
Claustrum
nTPM: 23.2
2568 Male, age 61, both hemispheres 26.1
1956 Male, age 74, unknown 25.6
2292 Female, age 85, both hemispheres 24.7
2198 Male, age 80, both hemispheres 24.3
2645 Female, age 72, unknown 23.9
2284 Female, age 91, both hemispheres 23.1
2491 Male, age 75, both hemispheres 21.5
2196 Female, age 79, unknown 19.9
2392 Female, age 94, both hemispheres 19.5
Globus pallidus, externus
nTPM: 23.1
2395 Male, age 75, both hemispheres 27.4
2772 Female, age 79, unknown 23.1
2567 Female, age 72, unknown 22.4
1996 Male, age 80, right hemisphere 21.7
2646 Male, age 61, right hemisphere 20.8
Globus pallidus, internus
nTPM: 22.8
2111 Female, age 85, right hemisphere 30.0
2778 Female, age 91, both hemispheres 26.6
2287 Male, age 75, right hemisphere 26.4
2566 Female, age 72, unknown 25.3
2037 Male, age 80, right hemisphere 19.2
1818 Male, age 74, unknown 18.9
2483 Female, age 94, right hemisphere 13.4
Nucleus accumbens
nTPM: 14.8
2286 Male, age 75, left hemisphere 19.5
2391 Female, age 94, left hemisphere 17.9
2732 Male, age 80, right hemisphere 17.7
2698 Female, age 72, unknown 16.0
1783 Male, age 74, unknown 13.3
1806 Female, age 85, left hemisphere 12.3
1856 Female, age 91, right hemisphere 11.2
2824 Male, age 61, right hemisphere 10.6
Nucleus basalis of Meynert
nTPM: 19.0
2821 Male, age 75, both hemispheres 21.4
2484 Female, age 94, left hemisphere 18.6
2393 Male, age 80, right hemisphere 18.5
2569 Male, age 61, both hemispheres 17.6
Nucleus of the diagonal band
nTPM: 17.5
2029 Male, age 61, right hemisphere 23.7
1812 Female, age 91, both hemispheres 19.0
2775 Male, age 80, right hemisphere 18.6
2195 Female, age 85, both hemispheres 15.8
1979 Male, age 74, unknown 10.6
Olfactory tubercle
nTPM: 19.1
1998 Female, age 91, both hemispheres 20.5
2487 Female, age 94, left hemisphere 19.8
1846 Male, age 80, right hemisphere 19.0
2856 Male, age 75, right hemisphere 17.2
Putamen
nTPM: 18.7
2647 Male, age 75, left hemisphere 24.2
2489 Female, age 72, unknown 21.5
1829 Male, age 74, unknown 20.9
2466 Female, age 79, unknown 20.7
1937 Female, age 91, right hemisphere 15.5
2482 Female, age 94, left hemisphere 14.5
1838 Male, age 80, right hemisphere 13.8
Septal nuclei
nTPM: 17.3
2629 Female, age 94, right hemisphere 20.8
2031 Female, age 72, unknown 20.7
1960 Male, age 74, unknown 17.5
2009 Female, age 91, both hemispheres 17.3
2059 Female, age 85, both hemispheres 16.0
2394 Male, age 61, left hemisphere 14.5
2199 Male, age 80, right hemisphere 14.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 17.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.3
Samples: 246

Max nTPM: 29.9
Min nTPM: 2.8
Std nTPM: 4.8
Median nTPM: 12.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 29.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 29.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 28.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 25.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 24.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 24.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 23.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 23.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 23.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 22.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 22.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.6
Samples: 246

Max nTPM: 36.4
Min nTPM: 1.2
Std nTPM: 4.3
Median nTPM: 6.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 36.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 28.0
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 24.4
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 23.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 22.3
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 21.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 19.2
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 18.4
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 17.6
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 16.3
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 16.1
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Brain - Putamen (basal ganglia)
Average nTPM: 17.5
Samples: 205

Max nTPM: 40.3
Min nTPM: 3.4
Std nTPM: 7.0
Median nTPM: 17.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 40.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 39.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 38.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 36.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 35.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 33.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 32.5
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 31.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 29.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 29.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 29.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.2
FF:10164-103B2 76 years, female 15.2
Globus pallidus
Scaled Tags Per Million: 51.4
FF:10161-103A8 76 years, female 53.1
FF:10175-103C4 60 years, female 49.7
Nucleus accumbens
Scaled Tags Per Million: 51.0
FF:10037-101F1 23-56 years, mixed 51.0
Putamen
Scaled Tags Per Million: 16.4
FF:10176-103C5 60 years, female 16.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 26.0
Pig sample Sample description nTPM
Caudate
nTPM: 26.0
Samples: 4

Max nTPM: 36.2
Min nTPM: 16.6
Sample A Female 16.6
Sample B Female 24.1
Sample C Male 36.2
Sample D Male 27.2
Putamen
nTPM: 25.9
Samples: 4

Max nTPM: 46.8
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 23.1
Sample C Male 46.8
Sample D Male 26.9
Septum
nTPM: 9.3
Samples: 4

Max nTPM: 15.0
Min nTPM: 2.1
Sample A Female 11.8
Sample B Female 15.0
Sample C Male 8.1
Sample D Male 2.1
Ventral pallidum
nTPM: 15.3
Samples: 4

Max nTPM: 20.0
Min nTPM: 9.0
Sample A Female 18.5
Sample B Female 20.0
Sample C Male 9.0
Sample D Male 13.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 68.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 68.8
Samples: 4

Max nTPM: 72.6
Min nTPM: 66.5
Sample A Male 68.8
Sample B Male 72.6
Sample C Female 67.1
Sample D Female 66.5
Septum
nTPM: 29.5
Samples: 4

Max nTPM: 36.8
Min nTPM: 23.3
Sample A Male 36.8
Sample B Male 23.3
Sample C Female 31.6
Sample D Female 26.1
Ventral forebrain
nTPM: 62.1
Samples: 4

Max nTPM: 73.3
Min nTPM: 53.7
Sample A Male 53.7
Sample B Male 59.3
Sample C Female 73.3
Sample D Female 62.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
70723307 Antisense, RP_050630_04_H05, Mouse strain C57BL/6J (56 days, male) 0.1
73931426 Antisense, RP_051214_04_F06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
73931426 Antisense, RP_051214_04_F06, Mouse strain C57BL/6J (56 days, male) 0.0
70723307 Antisense, RP_050630_04_H05, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.