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SYNDIG1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.0 nTPM
HPA:23.0 nTPM
GTEx:18.9 nTPM
FANTOM5:69.8 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:35.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.4
2586 Male, age 75, left hemisphere 23.6
1830 Male, age 51, unknown 23.1
2411 Female, age 72, unknown 22.4
2666 Male, age 74, left hemisphere 21.9
1870 Female, age 42, unknown 21.7
1833 Male, age 53, unknown 21.0
2828 Female, age 72, unknown 20.8
2019 Male, age 18, unknown 20.6
2219 Male, age 76, both hemispheres 20.2
1827 Male, age 72, unknown 19.0
Dorsal raphe nucleus
nTPM: 17.7
1828 Male, age 53, unknown 20.0
2750 Male, age 76, both hemispheres 19.2
2016 Female, age 72, unknown 18.2
2047 Male, age 72, unknown 16.4
2298 Female, age 72, unknown 14.4
Inferior colliculus
nTPM: 19.8
1890 Male, age 53, unknown 21.5
1848 Female, age 42, unknown 20.4
2849 Male, age 72, unknown 19.6
2097 Female, age 72, unknown 17.8
Median raphe nucleus
nTPM: 14.4
2220 Male, age 76, midline 14.4
Pedunculopontine tegmental nucleus
nTPM: 19.2
1921 Female, age 85, both hemispheres 20.1
2334 Male, age 80, both hemispheres 19.2
2338 Male, age 61, both hemispheres 18.3
Periaquaductal grey, anterior
nTPM: 16.8
2502 Female, age 75, unknown 19.6
1795 Male, age 51, unknown 16.1
1947 Male, age 18, unknown 14.7
Periaquaductal grey, dorsal
nTPM: 16.1
1831 Male, age 72, unknown 18.6
2464 Female, age 72, unknown 17.8
1840 Male, age 53, unknown 15.5
2850 Male, age 76, both hemispheres 12.3
Periaquaductal grey, lateral
nTPM: 17.5
2272 Male, age 74, both hemispheres 20.6
2053 Male, age 18, unknown 19.3
2140 Male, age 76, both hemispheres 12.5
Pretectal area
nTPM: 20.2
2407 Male, age 75, both hemispheres 29.5
1816 Male, age 51, unknown 20.8
2007 Male, age 72, unknown 20.5
2273 Male, age 74, both hemispheres 20.4
1815 Male, age 53, unknown 20.2
1944 Female, age 72, unknown 20.0
2316 Male, age 76, right hemisphere 19.8
2825 Male, age 18, unknown 19.5
2667 Female, age 75, unknown 18.2
1817 Female, age 42, unknown 18.1
2224 Female, age 72, unknown 14.7
Red nucleus
nTPM: 23.0
2584 Male, age 75, left hemisphere 28.3
1865 Male, age 51, unknown 25.2
2785 Male, age 18, unknown 24.6
2227 Male, age 72, unknown 24.2
2769 Male, age 72, unknown 23.9
1904 Male, age 53, unknown 23.7
1954 Female, age 42, unknown 23.5
2503 Female, age 72, unknown 22.8
2823 Male, age 76, right hemisphere 22.0
1821 Female, age 72, unknown 21.0
2588 Male, age 74, left hemisphere 19.4
2725 Female, age 75, unknown 17.0
Substantia nigra
nTPM: 19.5
2583 Male, age 75, right hemisphere 31.0
2590 Female, age 75, unknown 27.1
2665 Male, age 74, both hemispheres 21.8
1889 Female, age 72, unknown 19.7
1941 Male, age 53, unknown 18.1
2699 Male, age 18, unknown 17.0
2409 Female, age 72, unknown 16.5
1851 Male, age 51, unknown 16.4
2241 Male, age 72, unknown 14.2
1916 Female, age 42, unknown 13.6
Superior colliculus
nTPM: 22.5
1913 Female, age 42, unknown 27.1
1995 Male, age 72, unknown 26.7
2664 Male, age 75, both hemispheres 24.8
2261 Male, age 18, unknown 24.1
2587 Male, age 74, left hemisphere 23.1
1839 Male, age 51, unknown 21.2
1895 Male, age 76, right hemisphere 20.5
2087 Female, age 72, unknown 20.2
2668 Female, age 75, unknown 19.4
1796 Male, age 53, unknown 18.3
Ventral tegmental area
nTPM: 18.7
2223 Female, age 72, unknown 21.6
2410 Female, age 72, unknown 19.8
1942 Male, age 51, unknown 18.6
2021 Male, age 53, unknown 18.5
2218 Male, age 76, both hemispheres 17.1
1915 Female, age 42, unknown 16.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.9
Samples: 139

Max nTPM: 65.8
Min nTPM: 3.6
Std nTPM: 9.0
Median nTPM: 18.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 65.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 44.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 40.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 39.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 38.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 35.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 33.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 33.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 32.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 32.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 32.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.8
FF:10158-103A5 76 years, female 69.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.8
Pig sample Sample description nTPM
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 13.4
Min nTPM: 2.7
Sample A Female 2.7
Sample B Female 3.1
Sample C Male 13.4
Sample D Male 11.6
Periaqueductal gray
nTPM: 3.9
Samples: 3

Max nTPM: 4.6
Min nTPM: 3.4
Sample B Female 3.4
Sample C Male 4.6
Sample D Male 3.6
Substantia nigra
nTPM: 2.7
Samples: 4

Max nTPM: 4.4
Min nTPM: 1.7
Sample A Female 4.4
Sample B Female 2.2
Sample C Male 2.4
Sample D Male 1.7
Superior colliculi
nTPM: 8.8
Samples: 4

Max nTPM: 14.1
Min nTPM: 6.6
Sample A Female 7.6
Sample B Female 6.6
Sample C Male 14.1
Sample D Male 7.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.1
Samples: 4

Max nTPM: 36.2
Min nTPM: 33.7
Sample A Male 33.7
Sample B Male 34.5
Sample C Female 35.9
Sample D Female 36.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70723307 Antisense, RP_050630_04_H05, Mouse strain C57BL/6J (56 days, male) 0.2
73931426 Antisense, RP_051214_04_F06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.