ABOUTMENU
HELP
NEWS
HTATSF1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.4 nTPM
HPA:56.4 nTPM
GTEx:70.4 nTPM
FANTOM5:54.5 Scaled Tags Per Million
Pig:22.2 nTPM
Mouse:47.3 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.5
1870 Female, age 42, unknown 54.5
2219 Male, age 76, both hemispheres 54.3
1827 Male, age 72, unknown 53.5
2666 Male, age 74, left hemisphere 53.2
2411 Female, age 72, unknown 52.9
2828 Female, age 72, unknown 52.6
1833 Male, age 53, unknown 52.2
2586 Male, age 75, left hemisphere 51.8
1830 Male, age 51, unknown 50.9
2019 Male, age 18, unknown 49.1
Dorsal raphe nucleus
nTPM: 52.9
2016 Female, age 72, unknown 56.1
1828 Male, age 53, unknown 55.6
2047 Male, age 72, unknown 52.1
2750 Male, age 76, both hemispheres 50.6
2298 Female, age 72, unknown 50.4
Inferior colliculus
nTPM: 56.4
2849 Male, age 72, unknown 58.6
1890 Male, age 53, unknown 56.8
2097 Female, age 72, unknown 55.5
1848 Female, age 42, unknown 54.9
Median raphe nucleus
nTPM: 53.2
2220 Male, age 76, midline 53.2
Pedunculopontine tegmental nucleus
nTPM: 52.8
2334 Male, age 80, both hemispheres 53.6
2338 Male, age 61, both hemispheres 52.6
1921 Female, age 85, both hemispheres 52.1
Periaquaductal grey, anterior
nTPM: 51.0
2502 Female, age 75, unknown 52.4
1947 Male, age 18, unknown 50.7
1795 Male, age 51, unknown 50.0
Periaquaductal grey, dorsal
nTPM: 53.8
2850 Male, age 76, both hemispheres 56.8
1840 Male, age 53, unknown 54.6
2464 Female, age 72, unknown 52.1
1831 Male, age 72, unknown 51.6
Periaquaductal grey, lateral
nTPM: 51.3
2053 Male, age 18, unknown 54.0
2140 Male, age 76, both hemispheres 51.4
2272 Male, age 74, both hemispheres 48.6
Pretectal area
nTPM: 53.8
1816 Male, age 51, unknown 59.0
1817 Female, age 42, unknown 55.4
1815 Male, age 53, unknown 55.3
1944 Female, age 72, unknown 55.0
2224 Female, age 72, unknown 54.7
2273 Male, age 74, both hemispheres 53.0
2825 Male, age 18, unknown 52.9
2407 Male, age 75, both hemispheres 52.7
2667 Female, age 75, unknown 52.0
2007 Male, age 72, unknown 51.5
2316 Male, age 76, right hemisphere 50.5
Red nucleus
nTPM: 53.1
2503 Female, age 72, unknown 58.4
2725 Female, age 75, unknown 56.5
1821 Female, age 72, unknown 54.7
1954 Female, age 42, unknown 54.7
2769 Male, age 72, unknown 52.8
1865 Male, age 51, unknown 52.6
1904 Male, age 53, unknown 52.6
2227 Male, age 72, unknown 52.4
2823 Male, age 76, right hemisphere 52.2
2588 Male, age 74, left hemisphere 51.6
2785 Male, age 18, unknown 50.5
2584 Male, age 75, left hemisphere 48.3
Substantia nigra
nTPM: 54.1
2699 Male, age 18, unknown 58.0
2241 Male, age 72, unknown 57.1
2409 Female, age 72, unknown 56.8
2665 Male, age 74, both hemispheres 55.0
1889 Female, age 72, unknown 53.6
1916 Female, age 42, unknown 53.2
2590 Female, age 75, unknown 52.4
1941 Male, age 53, unknown 51.6
2583 Male, age 75, right hemisphere 51.6
1851 Male, age 51, unknown 51.4
Superior colliculus
nTPM: 53.2
2587 Male, age 74, left hemisphere 55.6
1839 Male, age 51, unknown 54.6
2261 Male, age 18, unknown 54.3
2087 Female, age 72, unknown 53.9
1913 Female, age 42, unknown 53.7
1995 Male, age 72, unknown 53.3
1796 Male, age 53, unknown 52.0
1895 Male, age 76, right hemisphere 51.6
2668 Female, age 75, unknown 51.6
2664 Male, age 75, both hemispheres 51.2
Ventral tegmental area
nTPM: 52.6
2223 Female, age 72, unknown 54.5
1915 Female, age 42, unknown 53.2
2218 Male, age 76, both hemispheres 52.4
1942 Male, age 51, unknown 52.3
2410 Female, age 72, unknown 51.9
2021 Male, age 53, unknown 51.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.4
Samples: 139

Max nTPM: 124.2
Min nTPM: 40.9
Std nTPM: 15.6
Median nTPM: 68.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 124.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 121.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 118.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 117.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 105.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 104.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 104.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 101.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 95.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 94.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 94.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.5
FF:10158-103A5 76 years, female 54.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.2
Pig sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 31.2
Min nTPM: 17.1
Sample A Female 31.2
Sample B Female 22.4
Sample C Male 17.1
Sample D Male 18.3
Periaqueductal gray
nTPM: 19.6
Samples: 3

Max nTPM: 21.0
Min nTPM: 17.7
Sample B Female 21.0
Sample C Male 20.1
Sample D Male 17.7
Substantia nigra
nTPM: 21.1
Samples: 4

Max nTPM: 24.5
Min nTPM: 17.6
Sample A Female 24.5
Sample B Female 17.6
Sample C Male 20.6
Sample D Male 21.6
Superior colliculi
nTPM: 19.2
Samples: 4

Max nTPM: 23.3
Min nTPM: 15.0
Sample A Female 23.3
Sample B Female 15.0
Sample C Male 17.6
Sample D Male 20.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.3
Samples: 4

Max nTPM: 50.7
Min nTPM: 44.2
Sample A Male 44.2
Sample B Male 48.8
Sample C Female 50.7
Sample D Female 45.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
69059923 Antisense, RP_050317_04_E04, Mouse strain C57BL/6J (56 days, male) 1.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.