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ARHGEF7
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.5 nTPM
HPA:28.5 nTPM
GTEx:29.9 nTPM
FANTOM5:94.6 Scaled Tags Per Million
Pig:32.6 nTPM
Mouse:35.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.0
2019 Male, age 18, unknown 31.0
2411 Female, age 72, unknown 27.0
1827 Male, age 72, unknown 24.3
2666 Male, age 74, left hemisphere 22.2
2219 Male, age 76, both hemispheres 21.4
1830 Male, age 51, unknown 20.1
1833 Male, age 53, unknown 19.8
2828 Female, age 72, unknown 16.5
2586 Male, age 75, left hemisphere 15.3
1870 Female, age 42, unknown 11.9
Dorsal raphe nucleus
nTPM: 16.3
2750 Male, age 76, both hemispheres 27.1
2298 Female, age 72, unknown 15.8
1828 Male, age 53, unknown 13.7
2047 Male, age 72, unknown 13.0
2016 Female, age 72, unknown 11.8
Inferior colliculus
nTPM: 18.3
2097 Female, age 72, unknown 19.8
1890 Male, age 53, unknown 19.4
2849 Male, age 72, unknown 18.4
1848 Female, age 42, unknown 15.7
Median raphe nucleus
nTPM: 23.1
2220 Male, age 76, midline 23.1
Pedunculopontine tegmental nucleus
nTPM: 19.2
1921 Female, age 85, both hemispheres 22.0
2334 Male, age 80, both hemispheres 18.1
2338 Male, age 61, both hemispheres 17.6
Periaquaductal grey, anterior
nTPM: 18.6
1795 Male, age 51, unknown 21.6
2502 Female, age 75, unknown 17.2
1947 Male, age 18, unknown 16.9
Periaquaductal grey, dorsal
nTPM: 15.2
2464 Female, age 72, unknown 21.7
1840 Male, age 53, unknown 16.3
1831 Male, age 72, unknown 12.9
2850 Male, age 76, both hemispheres 10.0
Periaquaductal grey, lateral
nTPM: 14.7
2140 Male, age 76, both hemispheres 15.0
2272 Male, age 74, both hemispheres 14.8
2053 Male, age 18, unknown 14.2
Pretectal area
nTPM: 28.5
1944 Female, age 72, unknown 41.7
2007 Male, age 72, unknown 40.5
1816 Male, age 51, unknown 40.4
1815 Male, age 53, unknown 35.5
1817 Female, age 42, unknown 34.9
2667 Female, age 75, unknown 24.6
2407 Male, age 75, both hemispheres 23.1
2316 Male, age 76, right hemisphere 21.9
2224 Female, age 72, unknown 18.9
2825 Male, age 18, unknown 17.5
2273 Male, age 74, both hemispheres 14.3
Red nucleus
nTPM: 19.0
2785 Male, age 18, unknown 32.7
2823 Male, age 76, right hemisphere 26.2
2588 Male, age 74, left hemisphere 24.3
2584 Male, age 75, left hemisphere 22.4
2503 Female, age 72, unknown 19.8
2725 Female, age 75, unknown 19.1
1904 Male, age 53, unknown 17.7
2227 Male, age 72, unknown 15.1
2769 Male, age 72, unknown 14.1
1865 Male, age 51, unknown 13.5
1821 Female, age 72, unknown 11.9
1954 Female, age 42, unknown 11.0
Substantia nigra
nTPM: 21.5
2409 Female, age 72, unknown 32.1
1889 Female, age 72, unknown 30.9
2583 Male, age 75, right hemisphere 26.8
2241 Male, age 72, unknown 21.5
1941 Male, age 53, unknown 20.6
2590 Female, age 75, unknown 20.4
1851 Male, age 51, unknown 18.4
2665 Male, age 74, both hemispheres 17.7
1916 Female, age 42, unknown 15.3
2699 Male, age 18, unknown 11.4
Superior colliculus
nTPM: 23.8
2087 Female, age 72, unknown 37.6
1913 Female, age 42, unknown 28.5
2668 Female, age 75, unknown 28.2
1796 Male, age 53, unknown 24.8
2261 Male, age 18, unknown 23.9
1895 Male, age 76, right hemisphere 23.8
1995 Male, age 72, unknown 23.7
1839 Male, age 51, unknown 16.8
2587 Male, age 74, left hemisphere 16.0
2664 Male, age 75, both hemispheres 14.1
Ventral tegmental area
nTPM: 19.2
2218 Male, age 76, both hemispheres 24.6
2410 Female, age 72, unknown 22.5
1942 Male, age 51, unknown 21.4
2223 Female, age 72, unknown 18.8
2021 Male, age 53, unknown 14.0
1915 Female, age 42, unknown 13.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.9
Samples: 139

Max nTPM: 56.8
Min nTPM: 14.4
Std nTPM: 7.3
Median nTPM: 28.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 56.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 54.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 53.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 51.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 50.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 45.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 42.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 41.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 40.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 39.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 39.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.6
FF:10158-103A5 76 years, female 94.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.6
Pig sample Sample description nTPM
Midbrain
nTPM: 32.6
Samples: 4

Max nTPM: 41.4
Min nTPM: 29.0
Sample A Female 29.0
Sample B Female 29.5
Sample C Male 41.4
Sample D Male 30.6
Periaqueductal gray
nTPM: 25.7
Samples: 3

Max nTPM: 28.5
Min nTPM: 21.9
Sample B Female 28.5
Sample C Male 26.6
Sample D Male 21.9
Substantia nigra
nTPM: 30.8
Samples: 4

Max nTPM: 32.6
Min nTPM: 29.1
Sample A Female 29.5
Sample B Female 29.1
Sample C Male 32.1
Sample D Male 32.6
Superior colliculi
nTPM: 30.6
Samples: 4

Max nTPM: 34.4
Min nTPM: 26.4
Sample A Female 30.2
Sample B Female 26.4
Sample C Male 34.4
Sample D Male 31.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.1
Samples: 4

Max nTPM: 36.8
Min nTPM: 31.4
Sample A Male 35.8
Sample B Male 31.4
Sample C Female 36.8
Sample D Female 36.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
76003447 Antisense, RP_060608_02_D09, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.