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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:89.1 nTPM
HPA:89.1 nTPM
GTEx:32.7 nTPM
FANTOM5:188.6 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:56.7 nTPM
Allen mouse:2.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA056614
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 89.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 28.2
2288 Male, age 75, left hemisphere 48.3
1781 Male, age 74, unknown 29.0
2846 Female, age 79, unknown 28.8
2481 Female, age 94, left hemisphere 28.3
1854 Male, age 80, left hemisphere 27.0
2289 Male, age 61, right hemisphere 24.4
2290 Female, age 72, unknown 22.6
1857 Female, age 85, left hemisphere 17.0
Claustrum
nTPM: 54.1
2292 Female, age 85, both hemispheres 83.3
1956 Male, age 74, unknown 80.3
2392 Female, age 94, both hemispheres 56.5
2568 Male, age 61, both hemispheres 52.8
2196 Female, age 79, unknown 51.7
2284 Female, age 91, both hemispheres 43.2
2198 Male, age 80, both hemispheres 41.9
2645 Female, age 72, unknown 39.0
2491 Male, age 75, both hemispheres 37.8
Globus pallidus, externus
nTPM: 85.0
2646 Male, age 61, right hemisphere 125.6
2567 Female, age 72, unknown 89.9
1996 Male, age 80, right hemisphere 85.5
2772 Female, age 79, unknown 66.0
2395 Male, age 75, both hemispheres 58.1
Globus pallidus, internus
nTPM: 89.1
2111 Female, age 85, right hemisphere 137.1
2778 Female, age 91, both hemispheres 104.5
2566 Female, age 72, unknown 95.6
2037 Male, age 80, right hemisphere 83.3
2287 Male, age 75, right hemisphere 81.4
1818 Male, age 74, unknown 76.5
2483 Female, age 94, right hemisphere 45.4
Nucleus accumbens
nTPM: 42.4
2391 Female, age 94, left hemisphere 88.0
2732 Male, age 80, right hemisphere 52.7
2698 Female, age 72, unknown 50.2
2286 Male, age 75, left hemisphere 42.7
2824 Male, age 61, right hemisphere 32.3
1783 Male, age 74, unknown 29.5
1806 Female, age 85, left hemisphere 25.7
1856 Female, age 91, right hemisphere 17.9
Nucleus basalis of Meynert
nTPM: 54.3
2569 Male, age 61, both hemispheres 98.5
2821 Male, age 75, both hemispheres 49.9
2484 Female, age 94, left hemisphere 35.0
2393 Male, age 80, right hemisphere 34.0
Nucleus of the diagonal band
nTPM: 18.0
1812 Female, age 91, both hemispheres 25.9
1979 Male, age 74, unknown 18.2
2029 Male, age 61, right hemisphere 18.0
2195 Female, age 85, both hemispheres 14.5
2775 Male, age 80, right hemisphere 13.5
Olfactory tubercle
nTPM: 19.6
2856 Male, age 75, right hemisphere 22.0
1998 Female, age 91, both hemispheres 20.3
2487 Female, age 94, left hemisphere 19.6
1846 Male, age 80, right hemisphere 16.6
Putamen
nTPM: 35.3
2647 Male, age 75, left hemisphere 48.3
1829 Male, age 74, unknown 44.1
2489 Female, age 72, unknown 43.1
2482 Female, age 94, left hemisphere 42.1
1937 Female, age 91, right hemisphere 30.2
2466 Female, age 79, unknown 25.1
1838 Male, age 80, right hemisphere 14.1
Septal nuclei
nTPM: 26.1
2394 Male, age 61, left hemisphere 53.0
2199 Male, age 80, right hemisphere 34.3
2629 Female, age 94, right hemisphere 25.0
2059 Female, age 85, both hemispheres 23.6
2009 Female, age 91, both hemispheres 18.7
2031 Female, age 72, unknown 16.0
1960 Male, age 74, unknown 11.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 32.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.1
Samples: 246

Max nTPM: 73.1
Min nTPM: 2.9
Std nTPM: 12.7
Median nTPM: 18.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 73.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 70.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 67.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 61.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 54.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 53.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 52.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 51.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 49.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 48.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 48.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.4
Samples: 246

Max nTPM: 156.3
Min nTPM: 2.3
Std nTPM: 14.8
Median nTPM: 10.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 156.3
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 77.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 74.6
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 63.0
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 62.1
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 61.1
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 57.8
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 48.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 45.9
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 43.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 42.6
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Brain - Putamen (basal ganglia)
Average nTPM: 32.7
Samples: 205

Max nTPM: 194.2
Min nTPM: 4.8
Std nTPM: 19.5
Median nTPM: 29.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 194.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 92.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 87.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 87.3
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 68.7
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 67.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 67.1
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 66.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 65.5
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 63.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 63.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 188.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.2
FF:10164-103B2 76 years, female 44.2
Globus pallidus
Scaled Tags Per Million: 188.6
FF:10161-103A8 76 years, female 239.2
FF:10175-103C4 60 years, female 138.1
Nucleus accumbens
Scaled Tags Per Million: 110.0
FF:10037-101F1 23-56 years, mixed 110.0
Putamen
Scaled Tags Per Million: 45.7
FF:10176-103C5 60 years, female 45.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 33.8
Pig sample Sample description nTPM
Caudate
nTPM: 10.2
Samples: 4

Max nTPM: 11.7
Min nTPM: 8.7
Sample A Female 9.3
Sample B Female 8.7
Sample C Male 11.0
Sample D Male 11.7
Putamen
nTPM: 33.8
Samples: 4

Max nTPM: 51.6
Min nTPM: 15.4
Sample A Female 51.6
Sample B Female 15.4
Sample C Male 20.9
Sample D Male 47.4
Septum
nTPM: 20.7
Samples: 4

Max nTPM: 31.5
Min nTPM: 13.5
Sample A Female 16.3
Sample B Female 13.5
Sample C Male 21.4
Sample D Male 31.5
Ventral pallidum
nTPM: 33.4
Samples: 4

Max nTPM: 53.9
Min nTPM: 8.7
Sample A Female 8.7
Sample B Female 20.8
Sample C Male 50.3
Sample D Male 53.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 56.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 56.7
Samples: 4

Max nTPM: 63.6
Min nTPM: 51.9
Sample A Male 57.1
Sample B Male 54.1
Sample C Female 63.6
Sample D Female 51.9
Septum
nTPM: 46.5
Samples: 4

Max nTPM: 67.8
Min nTPM: 28.3
Sample A Male 28.3
Sample B Male 37.1
Sample C Female 52.8
Sample D Female 67.8
Ventral forebrain
nTPM: 29.6
Samples: 4

Max nTPM: 35.3
Min nTPM: 24.8
Sample A Male 28.1
Sample B Male 24.8
Sample C Female 30.1
Sample D Female 35.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.4
69672258 Antisense, RP_050428_03_D04, Mouse strain C57BL/6J (56 days, male) 2.7
74882584 Antisense, RP_060315_04_F03, Mouse strain C57BL/6J (56 days, male) 2.1
Pallidum
Expression energy: 2.7
69672258 Antisense, RP_050428_03_D04, Mouse strain C57BL/6J (56 days, male) 2.8
74882584 Antisense, RP_060315_04_F03, Mouse strain C57BL/6J (56 days, male) 2.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.