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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:46.1 nTPM
HPA:46.1 nTPM
GTEx:53.4 nTPM
FANTOM5:90.0 Scaled Tags Per Million
Pig:27.4 nTPM
Mouse:39.9 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA056614
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 46.1
Sample id Sample description nTPM
Hippocampus
nTPM: 31.8
1911 Female, age 85, right hemisphere 40.8
2529 Female, age 94, left hemisphere 37.2
2621 Female, age 67, right hemisphere 30.5
1855 Male, age 76, left hemisphere 28.7
1898 Male, age 80, left hemisphere 27.1
2148 Female, age 91, left hemisphere 26.5
Dentate gyrus
nTPM: 33.4
2530 Female, age 94, left hemisphere 59.9
2528 Male, age 74, both hemispheres 32.7
2246 Female, age 85, both hemispheres 31.7
2010 Male, age 76, both hemispheres 30.7
2531 Female, age 67, both hemispheres 24.8
1927 Female, age 91, both hemispheres 20.5
Entorhinal gyrus
nTPM: 35.1
2117 Female, age 91, right hemisphere 52.9
2764 Male, age 80, right hemisphere 41.8
2613 Female, age 94, left hemisphere 32.7
1787 Male, age 76, left hemisphere 28.8
1938 Female, age 85, left hemisphere 28.4
2686 Male, age 75, right hemisphere 25.8
Hippocampus, CA1
nTPM: 24.6
2082 Female, age 91, right hemisphere 30.0
2527 Male, age 74, both hemispheres 28.7
1873 Female, age 85, both hemispheres 28.5
2749 Male, age 80, left hemisphere 23.2
2045 Male, age 76, both hemispheres 12.4
Hippocampus, CA2
nTPM: 32.5
2437 Female, age 94, left hemisphere 38.9
2249 Male, age 74, both hemispheres 36.4
1963 Male, age 80, left hemisphere 36.2
1940 Female, age 85, left hemisphere 32.2
2113 Female, age 91, right hemisphere 31.1
1892 Male, age 76, both hemispheres 20.1
Hippocampus, CA3
nTPM: 22.4
1891 Female, age 85, both hemispheres 47.0
1867 Male, age 76, both hemispheres 25.0
2436 Male, age 74, both hemispheres 21.1
2137 Male, age 80, left hemisphere 15.9
2861 Female, age 67, both hemispheres 13.0
2620 Female, age 94, left hemisphere 12.7
Parahippocampal cortex
nTPM: 26.8
2532 Female, age 72, left hemisphere 43.3
2692 Male, age 74, both hemispheres 38.5
1990 Female, age 91, right hemisphere 33.4
1850 Male, age 80, both hemispheres 27.1
2245 Female, age 91, both hemispheres 25.8
2018 Male, age 76, both hemispheres 24.2
1933 Female, age 85, both hemispheres 23.3
2693 Female, age 94, both hemispheres 22.4
2250 Female, age 67, right hemisphere 17.3
2622 Female, age 67, right hemisphere 13.2
Perirhinal gyrus
nTPM: 19.9
2848 Male, age 76, right hemisphere 27.4
2521 Female, age 94, right hemisphere 22.2
1794 Male, age 80, right hemisphere 19.4
1847 Female, age 91, left hemisphere 16.2
1841 Female, age 85, right hemisphere 14.6
Subiculum
nTPM: 46.1
2042 Male, age 76, both hemispheres 66.2
1901 Male, age 80, both hemispheres 55.8
2438 Female, age 94, left hemisphere 52.6
1977 Female, age 85, both hemispheres 38.1
2619 Male, age 74, both hemispheres 36.7
2729 Female, age 91, right hemisphere 27.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 53.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 53.4
Samples: 197

Max nTPM: 228.5
Min nTPM: 4.5
Std nTPM: 38.1
Median nTPM: 42.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 228.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 176.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 163.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 160.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 159.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 145.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 134.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 129.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 127.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 127.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 121.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 90.0
FF:10153-102I9 76 years, female 112.1
FF:10169-103B7 60 years, female 68.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 27.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 27.4
Samples: 4

Max nTPM: 45.8
Min nTPM: 7.9
Sample A Female 37.4
Sample B Female 18.6
Sample C Male 45.8
Sample D Male 7.9
Entorhinal cortex
nTPM: 7.6
Samples: 4

Max nTPM: 9.4
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 9.0
Sample C Male 6.2
Sample D Male 9.4
Subiculum
nTPM: 9.8
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.0
Sample A Female 8.8
Sample B Female 10.9
Sample C Male 8.0
Sample D Male 11.3
Ventral hippocampus
nTPM: 18.5
Samples: 4

Max nTPM: 29.7
Min nTPM: 7.0
Sample A Female 19.2
Sample B Female 7.0
Sample C Male 18.1
Sample D Male 29.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 39.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.4
Samples: 4

Max nTPM: 26.6
Min nTPM: 10.0
Sample A Male 26.6
Sample B Male 17.7
Sample C Female 19.1
Sample D Female 10.0
Hippocampal formation
nTPM: 39.9
Samples: 4

Max nTPM: 63.3
Min nTPM: 24.5
Sample A Male 24.5
Sample B Male 32.8
Sample C Female 63.3
Sample D Female 38.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
69672258 Antisense, RP_050428_03_D04, Mouse strain C57BL/6J (56 days, male) 1.9
74882584 Antisense, RP_060315_04_F03, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.