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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.5 nTPM
HPA:27.5 nTPM
GTEx:34.5 nTPM
FANTOM5:28.6 Scaled Tags Per Million
Pig:9.5 nTPM
Mouse:9.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.5
2019 Male, age 18, unknown 30.4
2586 Male, age 75, left hemisphere 30.1
1827 Male, age 72, unknown 26.4
2219 Male, age 76, both hemispheres 25.9
2828 Female, age 72, unknown 25.6
2411 Female, age 72, unknown 25.5
1833 Male, age 53, unknown 25.4
2666 Male, age 74, left hemisphere 25.3
1870 Female, age 42, unknown 25.1
1830 Male, age 51, unknown 25.0
Dorsal raphe nucleus
nTPM: 26.2
2298 Female, age 72, unknown 29.3
2750 Male, age 76, both hemispheres 26.5
2047 Male, age 72, unknown 26.1
1828 Male, age 53, unknown 25.1
2016 Female, age 72, unknown 23.8
Inferior colliculus
nTPM: 26.2
2097 Female, age 72, unknown 28.2
1890 Male, age 53, unknown 26.2
1848 Female, age 42, unknown 25.2
2849 Male, age 72, unknown 25.1
Median raphe nucleus
nTPM: 25.9
2220 Male, age 76, midline 25.9
Pedunculopontine tegmental nucleus
nTPM: 25.9
2334 Male, age 80, both hemispheres 26.2
2338 Male, age 61, both hemispheres 26.0
1921 Female, age 85, both hemispheres 25.4
Periaquaductal grey, anterior
nTPM: 27.5
1795 Male, age 51, unknown 27.9
2502 Female, age 75, unknown 27.7
1947 Male, age 18, unknown 26.8
Periaquaductal grey, dorsal
nTPM: 24.4
2464 Female, age 72, unknown 25.6
1840 Male, age 53, unknown 24.6
1831 Male, age 72, unknown 24.0
2850 Male, age 76, both hemispheres 23.5
Periaquaductal grey, lateral
nTPM: 24.6
2272 Male, age 74, both hemispheres 26.2
2140 Male, age 76, both hemispheres 24.3
2053 Male, age 18, unknown 23.2
Pretectal area
nTPM: 26.9
2007 Male, age 72, unknown 31.2
1816 Male, age 51, unknown 30.0
1817 Female, age 42, unknown 29.1
1815 Male, age 53, unknown 27.5
1944 Female, age 72, unknown 27.4
2224 Female, age 72, unknown 26.9
2273 Male, age 74, both hemispheres 26.4
2667 Female, age 75, unknown 25.6
2316 Male, age 76, right hemisphere 24.4
2825 Male, age 18, unknown 23.7
2407 Male, age 75, both hemispheres 23.1
Red nucleus
nTPM: 27.1
2785 Male, age 18, unknown 29.3
2503 Female, age 72, unknown 28.4
2584 Male, age 75, left hemisphere 28.2
2227 Male, age 72, unknown 27.8
2769 Male, age 72, unknown 27.5
2588 Male, age 74, left hemisphere 27.1
1821 Female, age 72, unknown 27.0
1865 Male, age 51, unknown 26.5
2725 Female, age 75, unknown 26.5
1904 Male, age 53, unknown 26.0
1954 Female, age 42, unknown 25.9
2823 Male, age 76, right hemisphere 25.4
Substantia nigra
nTPM: 25.3
2665 Male, age 74, both hemispheres 27.3
2583 Male, age 75, right hemisphere 27.0
1889 Female, age 72, unknown 26.1
1916 Female, age 42, unknown 26.0
2590 Female, age 75, unknown 25.9
1851 Male, age 51, unknown 25.6
1941 Male, age 53, unknown 25.4
2409 Female, age 72, unknown 24.0
2699 Male, age 18, unknown 23.9
2241 Male, age 72, unknown 22.1
Superior colliculus
nTPM: 25.9
1796 Male, age 53, unknown 27.8
2261 Male, age 18, unknown 27.4
1913 Female, age 42, unknown 27.0
2668 Female, age 75, unknown 26.5
1995 Male, age 72, unknown 26.4
2087 Female, age 72, unknown 26.3
2587 Male, age 74, left hemisphere 25.1
1895 Male, age 76, right hemisphere 24.2
1839 Male, age 51, unknown 24.1
2664 Male, age 75, both hemispheres 24.1
Ventral tegmental area
nTPM: 25.7
2223 Female, age 72, unknown 27.2
1942 Male, age 51, unknown 25.8
1915 Female, age 42, unknown 25.6
2021 Male, age 53, unknown 25.3
2218 Male, age 76, both hemispheres 25.1
2410 Female, age 72, unknown 24.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.5
Samples: 139

Max nTPM: 63.6
Min nTPM: 16.8
Std nTPM: 8.4
Median nTPM: 33.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 63.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 62.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 61.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 60.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 56.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 54.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 54.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 50.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 48.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 48.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 46.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.6
FF:10158-103A5 76 years, female 28.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.5
Pig sample Sample description nTPM
Midbrain
nTPM: 8.6
Samples: 4

Max nTPM: 11.9
Min nTPM: 6.7
Sample A Female 11.9
Sample B Female 7.3
Sample C Male 8.4
Sample D Male 6.7
Periaqueductal gray
nTPM: 5.8
Samples: 3

Max nTPM: 6.4
Min nTPM: 5.3
Sample B Female 5.7
Sample C Male 6.4
Sample D Male 5.3
Substantia nigra
nTPM: 8.2
Samples: 4

Max nTPM: 10.6
Min nTPM: 6.4
Sample A Female 10.6
Sample B Female 6.4
Sample C Male 8.5
Sample D Male 7.2
Superior colliculi
nTPM: 9.6
Samples: 4

Max nTPM: 11.8
Min nTPM: 6.6
Sample A Female 11.8
Sample B Female 8.4
Sample C Male 11.4
Sample D Male 6.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 11.0
Min nTPM: 9.1
Sample A Male 11.0
Sample B Male 9.5
Sample C Female 9.8
Sample D Female 9.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67765728 Antisense, RP_040916_01_G01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas project is funded
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