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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.1 nTPM
HPA:61.1 nTPM
GTEx:54.7 nTPM
FANTOM5:125.7 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:3.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.3
1830 Male, age 51, unknown 55.0
2666 Male, age 74, left hemisphere 54.1
1870 Female, age 42, unknown 53.9
2019 Male, age 18, unknown 53.7
1833 Male, age 53, unknown 51.7
2411 Female, age 72, unknown 51.5
2586 Male, age 75, left hemisphere 50.4
2828 Female, age 72, unknown 49.3
1827 Male, age 72, unknown 43.7
2219 Male, age 76, both hemispheres 39.6
Dorsal raphe nucleus
nTPM: 43.1
2750 Male, age 76, both hemispheres 53.1
2016 Female, age 72, unknown 45.4
1828 Male, age 53, unknown 42.2
2298 Female, age 72, unknown 37.8
2047 Male, age 72, unknown 37.1
Inferior colliculus
nTPM: 42.8
1848 Female, age 42, unknown 44.6
1890 Male, age 53, unknown 43.0
2097 Female, age 72, unknown 42.5
2849 Male, age 72, unknown 41.3
Median raphe nucleus
nTPM: 39.5
2220 Male, age 76, midline 39.5
Pedunculopontine tegmental nucleus
nTPM: 46.4
2338 Male, age 61, both hemispheres 50.3
2334 Male, age 80, both hemispheres 48.0
1921 Female, age 85, both hemispheres 40.8
Periaquaductal grey, anterior
nTPM: 42.3
2502 Female, age 75, unknown 45.2
1947 Male, age 18, unknown 42.5
1795 Male, age 51, unknown 39.3
Periaquaductal grey, dorsal
nTPM: 38.0
2464 Female, age 72, unknown 45.3
1831 Male, age 72, unknown 39.2
1840 Male, age 53, unknown 33.9
2850 Male, age 76, both hemispheres 33.8
Periaquaductal grey, lateral
nTPM: 39.2
2053 Male, age 18, unknown 40.7
2272 Male, age 74, both hemispheres 39.5
2140 Male, age 76, both hemispheres 37.3
Pretectal area
nTPM: 41.2
2316 Male, age 76, right hemisphere 48.5
1815 Male, age 53, unknown 46.2
1817 Female, age 42, unknown 43.7
2007 Male, age 72, unknown 43.5
2825 Male, age 18, unknown 42.2
2407 Male, age 75, both hemispheres 41.6
2224 Female, age 72, unknown 39.6
2273 Male, age 74, both hemispheres 38.4
2667 Female, age 75, unknown 37.8
1816 Male, age 51, unknown 36.3
1944 Female, age 72, unknown 36.1
Red nucleus
nTPM: 61.1
1865 Male, age 51, unknown 65.6
1904 Male, age 53, unknown 65.6
2769 Male, age 72, unknown 64.7
2823 Male, age 76, right hemisphere 64.6
2227 Male, age 72, unknown 64.5
2503 Female, age 72, unknown 63.5
2588 Male, age 74, left hemisphere 62.2
1954 Female, age 42, unknown 60.1
2785 Male, age 18, unknown 58.2
2725 Female, age 75, unknown 57.2
1821 Female, age 72, unknown 56.3
2584 Male, age 75, left hemisphere 50.7
Substantia nigra
nTPM: 45.3
2590 Female, age 75, unknown 50.0
1851 Male, age 51, unknown 49.8
2583 Male, age 75, right hemisphere 49.0
2665 Male, age 74, both hemispheres 47.3
2409 Female, age 72, unknown 45.9
2699 Male, age 18, unknown 45.9
1941 Male, age 53, unknown 42.0
1889 Female, age 72, unknown 41.4
2241 Male, age 72, unknown 41.2
1916 Female, age 42, unknown 40.2
Superior colliculus
nTPM: 46.4
1995 Male, age 72, unknown 56.9
1913 Female, age 42, unknown 54.4
2587 Male, age 74, left hemisphere 48.5
1839 Male, age 51, unknown 47.2
1796 Male, age 53, unknown 44.6
2668 Female, age 75, unknown 44.4
1895 Male, age 76, right hemisphere 43.6
2664 Male, age 75, both hemispheres 42.9
2087 Female, age 72, unknown 41.2
2261 Male, age 18, unknown 40.0
Ventral tegmental area
nTPM: 46.0
2410 Female, age 72, unknown 49.4
2223 Female, age 72, unknown 47.2
2021 Male, age 53, unknown 46.7
1915 Female, age 42, unknown 44.5
1942 Male, age 51, unknown 44.2
2218 Male, age 76, both hemispheres 43.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.7
Samples: 139

Max nTPM: 130.1
Min nTPM: 13.0
Std nTPM: 26.7
Median nTPM: 48.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 130.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 129.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 127.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 123.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 123.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 122.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 120.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 119.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 109.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 101.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 101.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.7
FF:10158-103A5 76 years, female 125.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.2
Pig sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 11.5
Min nTPM: 4.8
Sample A Female 11.5
Sample B Female 10.3
Sample C Male 6.0
Sample D Male 4.8
Periaqueductal gray
nTPM: 6.6
Samples: 3

Max nTPM: 9.3
Min nTPM: 4.6
Sample B Female 9.3
Sample C Male 6.0
Sample D Male 4.6
Substantia nigra
nTPM: 8.1
Samples: 4

Max nTPM: 10.3
Min nTPM: 6.4
Sample A Female 6.4
Sample B Female 8.8
Sample C Male 6.8
Sample D Male 10.3
Superior colliculi
nTPM: 7.0
Samples: 4

Max nTPM: 7.9
Min nTPM: 5.8
Sample A Female 6.9
Sample B Female 5.8
Sample C Male 7.9
Sample D Male 7.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.0
Samples: 4

Max nTPM: 4.1
Min nTPM: 1.4
Sample A Male 3.0
Sample B Male 1.4
Sample C Female 4.1
Sample D Female 3.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68523330 Antisense, RP_050118_02_E09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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